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questions
3
votes
5
replies
287
views
Help with running egsea()
EGSEA
11 days ago • updated 9 days ago
Chris
▴ 10
4
votes
5
replies
315
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
12 days ago • updated 2 days ago
Chris
▴ 10
2
votes
2
replies
223
views
fgsea significant result
fgsea
13 days ago • updated 12 days ago
Chris
▴ 10
0
votes
0
replies
135
views
Empty table plot using plotGseaTable()
fgsea
16 days ago • updated 14 days ago
Chris
▴ 10
3
votes
4
replies
260
views
Help with error using camera() in limma
CAMERA
limma
17 days ago
Chris
▴ 10
2
votes
2
replies
234
views
Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
18 days ago
Chris
▴ 10
0
votes
0
replies
94
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
18 days ago
Chris
▴ 10
15
votes
17
replies
1.3k
views
Why p value inconsistent when using different number of pathway score?
limma
27 days ago • updated 16 days ago
Chris
▴ 10
5
votes
9
replies
974
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
5 weeks ago • updated 29 days ago
Chris
▴ 10
2
votes
6
replies
459
views
How to make boxplot with pairwise and overall p value from Limma
t.test
boxplot
limma
anova
5 weeks ago
Chris
▴ 10
15
votes
23
replies
2.0k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
7 weeks ago • updated 17 days ago
Chris
▴ 10
3
votes
7
replies
882
views
Genes in open chromatin region
ChIPpeakAnno
DiffBind
written 8 months ago by
Chris
▴ 10
1
vote
1
reply
2.0k
views
Help with error DiffBind
DiffBind
updated 9 months ago by
Rory Stark
★ 5.2k • written 10 months ago by
Chris
▴ 10
2
votes
4
replies
1.0k
views
Reading data into chromVAR
chromVAR
10 months ago
Chris
▴ 10
1
vote
2
replies
820
views
Interpret plots from DiffBind
DiffBind
11 months ago • updated 10 months ago
Chris
▴ 10
2
votes
3
replies
652
views
Sample sheet file for DiffBind
DiffBind
updated 4 months ago by
meghanapple2
• 0 • written 11 months ago by
Chris
▴ 10
0
votes
0
replies
445
views
Help with error running DiffBind
DiffBind
11 months ago
Chris
▴ 10
8
votes
13
replies
1.9k
views
Interpret plot from DiffBind
DiffBind
updated 11 months ago by
Rory Stark
★ 5.2k • written 11 months ago by
Chris
▴ 10
0
votes
0
replies
509
views
Help with Diffbind result
DiffBind
12 months ago
Chris
▴ 10
4
votes
6
replies
951
views
Positive and negative value fold value in ATAC seq using DiffBind
DiffBind
ATACSeq
13 months ago
Chris
▴ 10
9
votes
16
replies
1.7k
views
How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
ChIPpeakAnno
13 months ago
Chris
▴ 10
5
votes
8
replies
1.1k
views
Help with error install csaw
ChIPSeq
ATACSeq
written 13 months ago by
Chris
▴ 10
3
votes
5
replies
875
views
How to annotate genes from results of DiffBind
ATACSeq
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Chris
▴ 10
2
votes
4
replies
939
views
Error with regionCounts()
csaw
13 months ago
Chris
▴ 10
8
votes
13
replies
2.9k
views
Help with Error in DiffBind
DiffBind
ATACSeq
14 months ago • updated 13 months ago
Chris
▴ 10
2
votes
1
reply
1.7k
views
DiffBind on ATAC seq data
ATACSeq
updated 14 months ago by
Rory Stark
★ 5.2k • written 14 months ago by
Chris
▴ 10
1
vote
2
replies
905
views
Error with FindConservedMarkers()
seurat
15 months ago
Chris
▴ 10
2
votes
2
replies
587
views
Error when run scCATCH
scCATCH
20 months ago
Chris
▴ 10
2
votes
7
replies
12k
views
Install DESeq2
DESeq2
22 months ago • updated 21 months ago
Chris
▴ 10
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