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2
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1.9k
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ExperimentHub full metadata
ExperimentHub
written 5 months ago by
igor
▴ 50
0
votes
1
reply
634
views
Comment:
Comment: AnnotationHub/ExperimentHub resources backup
6 months ago
igor
▴ 50
3
votes
3
replies
634
views
AnnotationHub/ExperimentHub resources backup
AnnotationHub
HubPub
ExperimentHub
updated 6 months ago by
James W. MacDonald
68k • written 6 months ago by
igor
▴ 50
0
votes
2
replies
2.9k
views
DESeq2 counts distribution across both genes and samples
deseq2
rnaseq
updated 3.7 years ago by
BarryGutierrez
• 0 • written 9.3 years ago by
igor
▴ 50
1
vote
1
reply
2.0k
views
DESeq2 batch effects
BatchEffect
DESeq2
RNASeq
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
igor
▴ 50
2
votes
1
reply
3.4k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea
ssgsea
gsva
pathways
updated 5.4 years ago by
Robert Castelo
★ 3.4k • written 5.4 years ago by
igor
▴ 50
2
votes
2
replies
3.4k
views
DESeqDataSetFromTximport with and without offset
deseq2
tximport
5.4 years ago
igor
▴ 50
0
votes
0
replies
3.4k
views
Comment:
C: DESeqDataSetFromTximport with and without offset
5.4 years ago
igor
▴ 50
0
votes
0
replies
4.1k
views
Comment:
C: VST for scRNA-seq
5.8 years ago
igor
▴ 50
6
votes
5
replies
4.1k
views
VST for scRNA-seq
deseq2
rnaseq
normalization
updated 5.8 years ago by
Michael Love
43k • written 5.8 years ago by
igor
▴ 50
0
votes
1
reply
4.1k
views
Comment:
C: VST for scRNA-seq
5.8 years ago
igor
▴ 50
0
votes
1
reply
1.8k
views
Comment:
C: DESeq2 lfcShrink and unshrunk fold changes
6.2 years ago
igor
▴ 50
0
votes
1
reply
1.8k
views
Comment:
C: DESeq2 lfcShrink and unshrunk fold changes
6.2 years ago
igor
▴ 50
6
votes
5
replies
1.8k
views
DESeq2 lfcShrink and unshrunk fold changes
deseq2
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
igor
▴ 50
0
votes
0
replies
1.5k
views
Comment:
C: tximport discrepancy between TPMs and lengthScaledTPMs
6.4 years ago
igor
▴ 50
0
votes
1
reply
1.5k
views
Comment:
C: tximport discrepancy between TPMs and lengthScaledTPMs
6.4 years ago
igor
▴ 50
0
votes
1
reply
1.5k
views
Comment:
C: tximport discrepancy between TPMs and lengthScaledTPMs
6.4 years ago
igor
▴ 50
0
votes
6
replies
1.5k
views
tximport discrepancy between TPMs and lengthScaledTPMs
tximport
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
igor
▴ 50
2
votes
1
reply
1.4k
views
tximeta remote versus local reference files
tximeta
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
igor
▴ 50
0
votes
0
replies
9.3k
views
Comment:
C: Pre-processing RNA-seq data (normalization and transformation) for GSVA
7.5 years ago
igor
▴ 50
0
votes
1
reply
9.3k
views
Comment:
C: Pre-processing RNA-seq data (normalization and transformation) for GSVA
7.5 years ago
igor
▴ 50
0
votes
1
reply
9.3k
views
Comment:
C: Pre-processing RNA-seq data (normalization and transformation) for GSVA
7.5 years ago
igor
▴ 50
0
votes
0
replies
9.3k
views
Comment:
C: Pre-processing RNA-seq data (normalization and transformation) for GSVA
7.5 years ago
igor
▴ 50
0
votes
1
reply
9.3k
views
Comment:
C: Pre-processing RNA-seq data (normalization and transformation) for GSVA
7.5 years ago
igor
▴ 50
0
votes
0
replies
1.7k
views
Rsamtools insert size
rsamtools
samtools
bam
bowtie2
7.8 years ago
igor
▴ 50
0
votes
1
reply
2.2k
views
Comment:
C: listDatasets(ensembl) displays strange behavior + scerevisiae_gene_ensembl not a
8.0 years ago
igor
▴ 50
0
votes
0
replies
1.4k
views
Counting exonic reads with DEXSeq and GenomicAlignments
dexseq
genomicalignments
exon usage
8.2 years ago
igor
▴ 50
0
votes
0
replies
1.7k
views
Comment:
C: DESeq: large difference in number of replicates per condition
8.2 years ago
igor
▴ 50
0
votes
0
replies
1.9k
views
Comment:
C: How to normalize Microarray expression data?
8.2 years ago
igor
▴ 50
0
votes
0
replies
1.7k
views
minfi estimateCellCounts normalized beta values adjusted for cell type
minfi
450k
8.5 years ago
igor
▴ 50
2
votes
3
replies
10k
views
DiffBind for ATAC-seq
atac-seq
diffbind
macs2
macs
peak finding
updated 8.7 years ago by
BioinfGuru
▴ 70 • written 9.3 years ago by
igor
▴ 50
0
votes
0
replies
1.8k
views
Comment:
C: DiffBind matrix of values
9.2 years ago
igor
▴ 50
1
vote
2
replies
1.8k
views
DiffBind matrix of values
diffbind
updated 9.2 years ago by
Rory Stark
★ 5.2k • written 9.2 years ago by
igor
▴ 50
3
votes
1
reply
2.2k
views
using variable in design formula
deseq2
r
design matrix
updated 9.3 years ago by
Michael Love
43k • written 9.3 years ago by
igor
▴ 50
3
votes
2
replies
3.0k
views
DiffBind "no lines available in input" error
diffbind
chipseq
updated 9.4 years ago by
Rory Stark
★ 5.2k • written 9.4 years ago by
igor
▴ 50
0
votes
1
reply
1.9k
views
ChIPseeker gene body plot
chipseeker
visualization
updated 9.5 years ago by
Guangchuang Yu
★ 1.2k • written 9.5 years ago by
igor
▴ 50
0
votes
0
replies
1.2k
views
Comment:
C: Bioconductor HTML docs seem to be broken
9.5 years ago
igor
▴ 50
0
votes
0
replies
1.3k
views
Answer:
A: nice 3D displays for PCA analysis
9.6 years ago
igor
▴ 50
0
votes
2
replies
1.2k
views
Bioconductor HTML docs seem to be broken
bioconductor
9.6 years ago
igor
▴ 50
0
votes
1
reply
3.6k
views
Comment:
C: bumphunter beta values
9.6 years ago
igor
▴ 50
0
votes
1
reply
3.6k
views
Comment:
C: bumphunter beta values
9.6 years ago
igor
▴ 50
0
votes
1
reply
3.6k
views
Comment:
C: bumphunter beta values
9.6 years ago
igor
▴ 50
0
votes
1
reply
3.6k
views
Comment:
C: bumphunter beta values
9.6 years ago
igor
▴ 50
2
votes
9
replies
3.6k
views
bumphunter beta values
methylation
minfi
bumphunter
updated 9.6 years ago by
James W. MacDonald
68k • written 9.6 years ago by
igor
▴ 50
0
votes
0
replies
1.3k
views
minfi dmpFinder input
minfi
9.6 years ago
igor
▴ 50
0
votes
1
reply
4.7k
views
Comment:
C: minfi MethylationEPIC errors
9.7 years ago
igor
▴ 50
0
votes
1
reply
4.7k
views
Comment:
C: minfi MethylationEPIC errors
9.7 years ago
igor
▴ 50
0
votes
1
reply
4.7k
views
Comment:
C: minfi MethylationEPIC errors
9.7 years ago
igor
▴ 50
0
votes
0
replies
4.7k
views
Comment:
C: minfi MethylationEPIC errors
9.7 years ago
igor
▴ 50
4
votes
8
replies
4.7k
views
minfi MethylationEPIC errors
minfi
methylation
IlluminaHumanMethylationEPICmanifest
IlluminaHumanMethylationEPICanno.ilmn10b.hg19
updated 9.7 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.7 years ago by
igor
▴ 50
88 results • Page
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