Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
SRAdb
•
reset
1
vote
3
replies
3.3k
views
SRAdb: Error downloading sqlite files
sradb
written 6.5 years ago by
arielle
• 0
0
votes
2
replies
1000
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
20 months ago • updated 19 months ago
jfertaj
▴ 30
0
votes
0
replies
654
views
Best straightforward way from SRA-fastq to Phyloseq Object
SRAdb
2.7 years ago
Davide
• 0
7
votes
5
replies
6.1k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 8.9 years ago by
Sean Davis
21k
0
votes
3
replies
1.1k
views
getSRA() from the SRAdb package is returning an empty data.frame from the full SQL file, but not the demo file
SRAdb
getSRA()
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
mac54
• 0
0
votes
0
replies
1.0k
views
listSRAfile: Error in if (is.na(sra_acc$run[i])) { : argument is of length zero
SRAdb
3.9 years ago
Aditya
▴ 160
0
votes
0
replies
940
views
Query based on PMIDs
SRAdb
geoquery
5.4 years ago
Deepak Tanwar
▴ 10
2
votes
0
replies
1.1k
views
Discrepancies between sradb, sraruninfo
sradb
5.9 years ago
langmea
▴ 20
1
vote
3
replies
2.0k
views
problem with getSRAfile in SRAdb
SRAdb
updated 6.5 years ago by
Jack Zhu
▴ 170 • written 6.5 years ago by
shidaxia
• 0
0
votes
8
replies
3.4k
views
error in SRAdb
SRAdb
SRAdb
updated 6.6 years ago by
djlemas
• 0 • written 9.8 years ago by
Faryabi, Robert NIH/NCI [F]
▴ 30
2
votes
1
reply
1.3k
views
Uniting SRA Data into a single file
R
fastq
SRA
sradb
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
grecoandreauni
• 0
0
votes
1
reply
1.7k
views
Empty SQL query result for SRA run
sradb
7.5 years ago
Thomas Sandmann
▴ 90
0
votes
2
replies
1.4k
views
SRAdb "outdated" sqlite db
sradb
sqlite
outdated
updated 7.6 years ago by
Sean Davis
21k • written 7.6 years ago by
Nicolas Delhomme
▴ 320
0
votes
1
reply
2.0k
views
Error downloading using SRAdb
fastq
sradb
ftp
updated 8.1 years ago by
Jack Zhu
▴ 170 • written 8.1 years ago by
yugi1001
• 0
2
votes
2
replies
1.9k
views
SRAdb: could not find function "sqliteTableFields"
sradb
sqlite
updated 9.5 years ago by
Sean Davis
21k • written 9.5 years ago by
dario.beraldi
• 0
0
votes
1
reply
1.3k
views
Analysis of Next Generation of Sequencing DAta
SRAdb
updated 9.5 years ago by
Sean Davis
21k • written 9.5 years ago by
Jerry Cholo
▴ 190
0
votes
0
replies
1.3k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
9.9 years ago
Hugh Shanahan
▴ 50
0
votes
2
replies
1.6k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
updated 9.9 years ago by
Jack Zhu
▴ 170 • written 9.9 years ago by
Al-Nasir, Jamie 2012
▴ 10
0
votes
0
replies
2.2k
views
SRAdb package - problems
Genetics
SRAdb
Genetics
SRAdb
10.9 years ago
Jack Zhu
▴ 170
0
votes
0
replies
1.6k
views
Is it possible to get SRA sample attributes for a given sample or experiment ID?
SRAdb
SRAdb
11.1 years ago
Vladimir Morozov
▴ 130
0
votes
2
replies
2.1k
views
getSRAdbFile cannot open URL
SRAdb
SRAdb
updated 11.6 years ago by
Martin Morgan
25k • written 11.6 years ago by
Nicholas Stong
▴ 10
0
votes
0
replies
1.2k
views
SRAdb: differences between the database and the NCBI website
PROcess
SRAdb
PROcess
SRAdb
11.8 years ago
Ben Woodcroft
▴ 40
0
votes
1
reply
1.3k
views
SRAdb: is the database missing some entries? (Ben Woodcroft)
SRAdb
SRAdb
updated 11.8 years ago by
Ben Woodcroft
▴ 40 • written 11.8 years ago by
Jack Zhu
▴ 170
0
votes
0
replies
1.3k
views
Cevap: Re: SRAdb error
SRAdb
SRAdb
12.1 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.8k
views
SRAdb error
SRAdb
SRAdb
updated 12.1 years ago by
Sean Davis
21k • written 12.1 years ago by
Ayten YIGITER
▴ 10
0
votes
0
replies
1.5k
views
Bioconductor Digest, Vol 95, Issue 7
PROcess
SRAdb
PROcess
SRAdb
13.3 years ago
Jack Zhu
▴ 170
0
votes
2
replies
1.4k
views
SRAdb listFastq error
SRAdb
SRAdb
updated 13.3 years ago by
Sean Davis
21k • written 13.3 years ago by
Mark Dunning
★ 1.1k
0
votes
8
replies
2.1k
views
'SRAdb useful for visualizing BAM files'
SRAdb
SRAdb
updated 14.0 years ago by
Jack Zhu
▴ 170 • written 14.0 years ago by
Paul Shannon
★ 1.1k
28 results • Page
1 of 1
Recent ...
Replies
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…
Comment: DESeq2 output used for PCA plot on R studio
by
ATpoint
★ 4.0k
> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…
Comment: minfi::read.metharray.exp
by
Basti
▴ 780
This is indeed correct now !
Comment: get BM error
by
Fara
• 0
Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529
Comment: get BM error
by
Mike Smith
★ 6.5k
Can you provide an example of the Ensemble IDs you're trying to convert?
Votes
Comment: get BM error
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Awards
• All
Scholar
to
ATpoint
★ 4.0k
Popular Question
to
Gordon Smyth
50k
Popular Question
to
i.sudbery
▴ 40
Scholar
to
Michael Love
41k
Popular Question
to
shepherl
3.8k
Locations
• All
India,
just now
Germany,
1 minute ago
Portugal,
1 minute ago
Wageningen University, Wageningen, the Netherlands,
1 minute ago
Toulouse, France,
3 minutes ago
Traffic: 763 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6