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Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow
DifferentialExpression
SingleCell
SingleCellMultiModal
MAST
22 months ago
Nik Tuzov
▴ 80
2
votes
3
replies
460
views
The basis for the full rank design matrix requirement in DESeq2
deseq2
updated 4.2 years ago by
Michael Love
42k • written 4.2 years ago by
Nik Tuzov
▴ 80
3
votes
4
replies
783
views
Error when providing contrast coefficients to lfcShrink() of DESeq2 package
deseq2
updated 4.4 years ago by
Michael Love
42k • written 4.4 years ago by
Nik Tuzov
▴ 80
4
votes
4
replies
1.3k
views
FCSTransTransform() implementation in flowCore
flowCore
FCSTrans
flow cytometry
updated 4.9 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
Nik Tuzov
▴ 80
2
votes
3
replies
1.2k
views
Logistic regression in MAST - question
mast
updated 5.2 years ago by
Andrew_McDavid
▴ 270 • written 5.2 years ago by
Nik Tuzov
▴ 80
2
votes
7
replies
1.7k
views
Estimation of non-trivial contrasts in MAST
mast
updated 5.2 years ago by
Andrew_McDavid
▴ 270 • written 5.2 years ago by
Nik Tuzov
▴ 80
10
votes
14
replies
4.3k
views
Why limma, edgeR, and DESeq did not implement fold change moderation first?
limma
edger
deseq
deseq2
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
Nik Tuzov
▴ 80
2
votes
9
replies
2.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.7 years ago by
davide risso
▴ 950 • written 6.8 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.3k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.8 years ago
Nik Tuzov
▴ 80
3
votes
9
replies
6.2k
views
Limma-voom vs limma-trend
limma
limma voom
limma-trend
updated 7.4 years ago by
Gordon Smyth
50k • written 7.4 years ago by
Nik Tuzov
▴ 80
10
votes
9
replies
1.8k
views
Overriding of shrinkage in DESeq2
deseq2
updated 8.1 years ago by
Michael Love
42k • written 8.1 years ago by
Nik Tuzov
▴ 80
25
votes
11
replies
7.8k
views
Normalization methodology in DESeq/DESeq2 vs edgeR
deseq
deseq2
edgeR
normalization
updated 8.5 years ago by
Simon Anders
★ 3.7k • written 8.5 years ago by
Nik Tuzov
▴ 80
4
votes
7
replies
1.7k
views
Performance of different flavors of limma and edgeR as the sample size goes up
limma
edgeR
8.6 years ago • updated 8.5 years ago
Nik Tuzov
▴ 80
5
votes
6
replies
3.3k
views
What was the very first paper to describe "limma-trend"?
limma
8.7 years ago
Nik Tuzov
▴ 80
1
vote
6
replies
1.8k
views
Interactions in DESeq2
deseq2
8.7 years ago
Nik Tuzov
▴ 80
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