Bioconductor Forum

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Europe Conference EuroBioC Events News

updated 3 days ago by angelaesper43 • 0 • written 19 months ago by Maria Doyle ▴ 70

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755

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phyloseq microbiome Metagenomics

updated 5 days ago by Rosso • 0 • written 11 months ago by abhisek001 • 0

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 3 days ago by Daniele • 0 • written 5.5 years ago by Guido Hooiveld ★ 4.0k

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958

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correlation wgcna network

updated 5 days ago by mariakenneth147 • 0 • written 18 months ago by pharamac • 0

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731

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ENmix IlluminaHumanMethylationEPICmanifest

updated 11 hours ago by James W. MacDonald 66k • written 2.0 years ago by Daphna • 0

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VariantAnnotation customProDB

updated 5 days ago by Yun • 0 • written 5.2 years ago by daniel.magnus.bader ▴ 50

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masigpro clustering

updated 3 days ago by anne-laure • 0 • written 7.9 years ago by ls299 • 0

57 results • Page 2 of 2

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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Comment: Help with ENmix readidat by minardsmitha ▴ 10

Did you figure this out? I have the same issue.

Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720

Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …

Votes

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

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