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RNA-Seq vs. Microarray
RNASeq
Microarray
Escherichia coli
limma
DESeq
RNASeq
Microarray
Escherichia coli
limma
11.7 years ago
Willemijn van Mossevelde
▴ 10
0
votes
0
replies
1.2k
views
adjusted P-values
genefilter
genefilter
11.7 years ago
Guest User
★ 13k
0
votes
3
replies
3.8k
views
phyloseq/DESeq gives negative transformed values
Microbiome
Normalization
Clustering
DESeq
DESeq2
Microbiome
Normalization
Clustering
DESeq
updated 11.7 years ago by
Sophie Josephine Weiss
▴ 130 • written 11.7 years ago by
Michael Love
43k
0
votes
1
reply
1.4k
views
total count filter cutoff
Transcription
Transcription
updated 11.7 years ago by
Mahnaz Kiani
▴ 20 • written 11.7 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
1.2k
views
narrowpeaks profMatrix rangeval error
ChIPSeq
chipseq
NarrowPeaks
ChIPSeq
chipseq
NarrowPeaks
11.7 years ago
Robert Chase
▴ 10
0
votes
1
reply
1.7k
views
Sciplot: Increasing the width of bargraph and decreasing the sapce b/n groups
graph
graph
updated 11.7 years ago by
James W. MacDonald
68k • written 11.7 years ago by
Roopa Subbaiaih
▴ 130
0
votes
0
replies
850
views
EdgeR analysis
11.7 years ago
Guest User
★ 13k
0
votes
1
reply
1.2k
views
limma small vs large number of samples
updated 11.7 years ago by
James W. MacDonald
68k • written 11.7 years ago by
Giovanni Bucci
▴ 60
0
votes
0
replies
918
views
limma small vs large number of samples
11.7 years ago
Giovanni Bucci
▴ 60
0
votes
0
replies
1.4k
views
Longest continuous sequence from multiple alignment
GO
ShortRead
GO
ShortRead
11.7 years ago
Guest User
★ 13k
0
votes
0
replies
835
views
Regarding hist() function in R
11.7 years ago
Guest User
★ 13k
0
votes
17
replies
3.2k
views
granges() method for GenomicRanges objects akin to ranges()...
updated 11.7 years ago by
Jeff Johnston
▴ 90 • written 11.7 years ago by
Tim Triche
★ 4.2k
0
votes
8
replies
1.7k
views
Instance type at Bioconductor - Cloud AMI
updated 11.7 years ago by
Dan Tenenbaum
★ 8.2k • written 11.7 years ago by
Rohmatul Fajriyah
▴ 190
0
votes
1
reply
3.9k
views
total count filter cutoff (edgeR)
edgeR
edgeR
11.7 years ago
Gordon Smyth
53k
0
votes
1
reply
1.0k
views
How to explain lumi expression values
updated 11.7 years ago by
Gordon Smyth
53k • written 11.7 years ago by
Rainy Gorilla
▴ 30
0
votes
0
replies
1.5k
views
viewApply drops feature names; transfer names between lists
Coverage
convert
Coverage
convert
11.7 years ago
Chris Seidel
▴ 80
0
votes
0
replies
1.3k
views
ComBat error message, thanks
miRNA
Normalization
affy
miRNA
Normalization
affy
11.7 years ago
Guan
▴ 20
0
votes
1
reply
1.4k
views
Howto achieve reverse complement in a ShortReadQ object
updated 11.7 years ago by
Martin Morgan
25k • written 11.7 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
Gene Expression Meta Analysis
Microarray
Microarray
updated 11.7 years ago by
gokmenzararsiz@erciyes.edu.tr
▴ 20 • written 11.7 years ago by
Guest User
★ 13k
0
votes
1
reply
4.4k
views
error in installing \"genefilter\"
genefilter
genefilter
updated 11.7 years ago by
James W. MacDonald
68k • written 11.7 years ago by
Guest User
★ 13k
0
votes
0
replies
998
views
BioC 2014 Registration Open
Cancer
Cancer
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.8k
views
SomaticSignatures
Cancer
BiocParallel
Cancer
BiocParallel
11.7 years ago
Martin Morgan
25k
0
votes
5
replies
4.3k
views
Gviz AnnotationTrack - Consistent y-scales
Coverage
Annotation
graph
Gviz
Coverage
Annotation
graph
Gviz
updated 11.7 years ago by
Lance Parsons
▴ 130 • written 11.7 years ago by
Aliaksei Holik
▴ 350
0
votes
9
replies
3.6k
views
GenomicRanges seqlengths problem
updated 11.7 years ago by
Valerie Obenchain
★ 6.8k • written 11.7 years ago by
Guest User
★ 13k
0
votes
0
replies
2.4k
views
EdgeR: dispersion estimation
edgeR
edgeR
11.7 years ago
Gordon Smyth
53k
1
vote
2
replies
1.4k
views
DESeq2 : interactions ?
updated 11.7 years ago by
Michael Love
43k • written 11.7 years ago by
Yvan Wenger
▴ 50
0
votes
0
replies
1.6k
views
Rgraphviz compilation error
graph
Rgraphviz
PROcess
graph
Rgraphviz
PROcess
11.7 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
9
replies
3.3k
views
total count filter cutoff
edgeR
edgeR
updated 11.7 years ago by
Wolfgang Huber
★ 13k • written 11.7 years ago by
Guest User
★ 13k
2
votes
5
replies
16k
views
DESeq2: Paired Test
DESeq
DESeq2
DESeq
DESeq2
11.8 years ago • updated 11.7 years ago
Pankaj Agarwal
▴ 100
0
votes
8
replies
2.5k
views
Feature request for Rsubread::featureCounts: read length adjustment
updated 11.7 years ago by
Ryan C. Thompson
★ 7.9k • written 11.7 years ago by
Wei Shi
★ 3.6k
0
votes
1
reply
1.7k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 11.7 years ago by
Quentin De Clerck
▴ 10 • written 11.7 years ago by
François Lefebvre
▴ 50
0
votes
0
replies
1.4k
views
Gviz AnnotationTrack - Consistent y-scales
Coverage
Gviz
Coverage
Gviz
11.7 years ago
Lance Parsons
▴ 130
0
votes
0
replies
1.1k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
RankProd
RankProd
11.7 years ago
Stefanie Busch
▴ 30
2
votes
30
replies
6.1k
views
ggbio 1.12.0 autoplot() with txdb example is broken
TranscriptDb
TranscriptDb
updated 11.7 years ago by
Tengfei Yin
▴ 490 • written 11.7 years ago by
Leonardo Collado Torres
★ 1.1k
0
votes
2
replies
2.1k
views
RGraphiz installation keeps on failing ubuntu 12.04 LTS server
Rgraphviz
Rgraphviz
updated 11.7 years ago by
Frederiek - Maarten Kerckhof
▴ 10 • written 11.7 years ago by
Guest User
★ 13k
0
votes
0
replies
808
views
RGraphiz installation keeps on failing ubuntu 12.04 LTS server
11.7 years ago
Kasper Hansen
▴ 30
0
votes
1
reply
2.2k
views
how to set up sampleInfo for methylation array in illumina 450K
lumi
lumi
updated 11.7 years ago by
Pan Du
▴ 440 • written 11.7 years ago by
Guest User
★ 13k
0
votes
0
replies
1.4k
views
Insignificant q-values in minfi
minfi
minfi
11.7 years ago
Guest User
★ 13k
0
votes
0
replies
1.9k
views
Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing
Epigenetics
PROcess
Sequencing
Epigenetics
PROcess
11.7 years ago
Brian Herb
▴ 80
0
votes
2
replies
1.0k
views
limma small vs large number of samples
updated 11.7 years ago by
James W. MacDonald
68k • written 11.7 years ago by
Giovanni Bucci
▴ 60
0
votes
0
replies
907
views
Strange error using the \"narrow\" function for a ShortReadQ object
11.7 years ago
Guest User
★ 13k
0
votes
0
replies
1.7k
views
GEOquery/virtualArray package error
Preprocessing
hgu95av2
virtualArray
Preprocessing
hgu95av2
virtualArray
11.7 years ago
Guest User
★ 13k
0
votes
4
replies
3.3k
views
EdgeR: dispersion estimation
edgeR
edgeR
11.7 years ago
Guest User
★ 13k
0
votes
0
replies
828
views
package for iAUC determination using gene expression data?
11.7 years ago
Guido Hooiveld
★ 4.1k
0
votes
1
reply
782
views
error when using waveTiling package
updated 11.7 years ago by
James W. MacDonald
68k • written 11.7 years ago by
chris blazier
▴ 10
2
votes
1
reply
2.1k
views
Rgraphviz install problem.HELP!!!!!
Rgraphviz
Rgraphviz
updated 11.7 years ago by
Kasper Hansen
▴ 30 • written 11.7 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
Unknown failure in virtualArrayLoadRaw
virtualArray
virtualArray
11.7 years ago
Guest User
★ 13k
0
votes
0
replies
1.5k
views
答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund
BiocGenerics
cummeRbund
BiocGenerics
11.7 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
904
views
Genes Symbols lists question
minfi
minfi
11.7 years ago
Giovanni Calice
▴ 160
0
votes
0
replies
2.2k
views
hclust and cutree
11.7 years ago
chris Jhon
▴ 260
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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