0
votes
1
reply
359
views
Pathway analysis microarray expresssion dataset
updated 12.3 years ago by ★ 1.6k • written 12.3 years ago by ★ 13k
0
votes
2
replies
1.7k
views
Affymetrix HTA 2 array analysis
Cancer Breast Cancer Breast
updated 12.3 years ago by 6.7k • written 12.3 years ago by ▴ 910
0
votes
1
reply
1.1k
views
about coverage profile comparison
Coverage Coverage
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 500
0
votes
1
reply
1.1k
views
longitudinal GWAS analysis
SNP SNP
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 40
0
votes
2
replies
948
views
Getting Introns Expression at a Per Gene Level
updated 12.3 years ago by ★ 6.8k • written 12.3 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Exception thrown in ReadAffy() when reading Hu-133B files in a GEO Dataset
GO GO
updated 12.3 years ago by 21k • written 12.3 years ago by ▴ 90
0
votes
3
replies
3.0k
views
Converting Affymetrix (*_at) Mouse Probe ID to HUGO gene symbol
convert convert
12.3 years ago Gundala Viswanath ▴ 230
0
votes
2
replies
3.0k
views
RMA normalization for Affymetrix CEL Files (Subscript out of bounds error)
Normalization affy Normalization affy
12.3 years ago Gundala Viswanath ▴ 230
0
votes
0
replies
1.5k
views
error in "count" for SummarizedExperiment in easyRNASeq
easyRNASeq DESeq2 easyRNASeq DESeq2
12.3 years ago Lescai, Francesco ▴ 380
0
votes
0
replies
1.5k
views
SnpStats - STRING_ELT() error and Fst
genomes genomes
12.3 years ago Voke AO ▴ 760
0
votes
0
replies
2.7k
views
8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
12.3 years ago Sarah JugurnauthLittle ▴ 20
0
votes
1
reply
1.3k
views
readGappedAlignments and param argument
Alignment Alignment
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 10
0
votes
5
replies
2.2k
views
rsbml package installation error
graph rsbml graph rsbml
updated 12.3 years ago by ▴ 50 • written 12.4 years ago by ★ 11k
0
votes
7
replies
5.6k
views
Simple pathway enrichment analysis for gene lists
Microarray Category gage KEGGREST ROntoTools Microarray Category gage KEGGREST ROntoTools
updated 12.3 years ago by ▴ 470 • written 12.3 years ago by ▴ 680
0
votes
3
replies
3.1k
views
how to convert ExpressionSet to AffyBatch
convert convert
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 2.0k
0
votes
0
replies
1.4k
views
open position: Bioinformatics Data Analyst @ IMP/Vienna
12.4 years ago Jaritz,Markus ▴ 20
0
votes
0
replies
1.2k
views
Statistical Bioinformatician Position, Oxford, UK
12.4 years ago Steve Taylor ▴ 280
0
votes
1
reply
1.1k
views
desing matrix and interaction term difficulty
limma limma
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.6k
views
PWMEnrich binding site position
PWMEnrich PWMEnrich
updated 12.4 years ago by ▴ 50 • written 12.4 years ago by ★ 13k
0
votes
1
reply
907
views
BUG: median(IRanges::Rle(NA), na.rm=TRUE)) should return NA
updated 12.4 years ago by 16k • written 12.4 years ago by ★ 1.6k
0
votes
2
replies
4.0k
views
getGmt error
GO hgu95a hgu95av2 GO hgu95a hgu95av2
updated 12.4 years ago by 25k • written 12.4 years ago by ★ 13k
0
votes
4
replies
2.5k
views
bug in GenomicRanges gaps?
GenomicFeatures GenomicRanges GenomicFeatures GenomicRanges
updated 12.4 years ago by ★ 1.6k • written 12.4 years ago by ▴ 220
0
votes
5
replies
3.1k
views
GSVA questions
cdf GSVA cdf GSVA
12.4 years ago Guest User ★ 13k
0
votes
0
replies
1.7k
views
creating geneset files (.gmt) for GSEA
GO biomaRt GO biomaRt
12.4 years ago Nehme Hachem ▴ 20
0
votes
0
replies
1.1k
views
(no subject)
Gviz Gviz
12.4 years ago Jager, Dominik ▴ 50
0
votes
0
replies
1.3k
views
Statistical Bioinformatician Position, Oxford UK
12.4 years ago Steve Taylor ▴ 280
0
votes
0
replies
756
views
error on microarray expression data
12.4 years ago Guest User ★ 13k
0
votes
2
replies
1.4k
views
Illumina based one color microarray data analysis
Microarray Clustering Microarray Clustering
updated 12.4 years ago by ★ 3.6k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.0k
views
Pathway analysis for differentially expressed genes
updated 12.4 years ago by ▴ 470 • written 12.4 years ago by ★ 13k
0
votes
0
replies
1.0k
views
Differential Expressed Genes analysis regarding limited genes
Sequencing Normalization GO DESeq Sequencing Normalization GO DESeq
12.4 years ago Michael Love 43k
0
votes
1
reply
1.4k
views
topGO analysis returns different gene counts for category than given for non-model organism
Annotation GO topGO Annotation GO topGO
updated 12.4 years ago by ▴ 20 • written 12.4 years ago by ▴ 400
0
votes
3
replies
1.7k
views
pathview puzzle
PROcess pathview PROcess pathview
updated 12.4 years ago by ★ 1.6k • written 12.4 years ago by ▴ 60
0
votes
3
replies
1.9k
views
metabolomics data analysis
Metabolomics Metabolomics
updated 12.4 years ago by 1.6k • written 12.4 years ago by ★ 13k
0
votes
0
replies
1.1k
views
Useful information about Ensembl release 73 mart databases
12.4 years ago Thomas Maurel ▴ 800
0
votes
0
replies
779
views
BUG: median(IRanges::Rle(NA),na.rm=TRUE)) should return NA
12.4 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.3k
views
Human Transcriptome Array 2.0 chip
Microarray affy Microarray affy
12.4 years ago Guest User ★ 13k
0
votes
9
replies
2.4k
views
package availability for R3.01
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 40
0
votes
2
replies
1.6k
views
blast probe clusters when using Affymetrix Gene Array Strips
zebrafish zebrafish
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 80
0
votes
1
reply
827
views
Differential Expressed Genes analysis regarding limited genes
Sequencing DESeq Sequencing DESeq
updated 12.4 years ago by 43k • written 12.4 years ago by ▴ 10
0
votes
0
replies
1.9k
views
ddCt calculation and statistics
qPCR ddCt qPCR ddCt
12.4 years ago Guest User ★ 13k
0
votes
2
replies
6.0k
views
sva + voom + limma
RNASeq Microarray sva RNASeq Microarray sva
updated 12.4 years ago by 53k • written 12.4 years ago by ▴ 120
0
votes
0
replies
883
views
beadarray\'s processSwathData for HumanHT12v4, with 3 swaths
12.4 years ago Mike Smith ★ 6.6k
0
votes
2
replies
1.3k
views
confusing P-value of one gene
edgeR DESeq2 edgeR DESeq2
updated 12.4 years ago by 53k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.4 years ago by ▴ 50 • written 12.4 years ago by ★ 4.3k
0
votes
1
reply
1.1k
views
coverage() in IRanges gives >0 coverage when weight == 0
Coverage Coverage
updated 12.4 years ago by ▴ 290 • written 12.4 years ago by ▴ 40
0
votes
0
replies
2.2k
views
sva + voom + limma. eBayes(trend=TRUE)
GO GO
12.4 years ago Meritxell Oliva ▴ 120
0
votes
1
reply
2.6k
views
preprocessCore load problem in R
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 550
0
votes
2
replies
1.4k
views
Using KeggGraph's KEGGpathway2reactionGraph and mergeKEGGgraphs functions
updated 12.4 years ago by ▴ 470 • written 12.4 years ago by ▴ 40
1
vote
1
reply
1.6k
views
Rsubread for paired end SOLID sequencing
Sequencing Alignment convert Rsubread Sequencing Alignment convert Rsubread
updated 12.4 years ago by ★ 3.6k • written 12.4 years ago by ▴ 50
0
votes
0
replies
890
views
accessing NetAffx annotation with "oligo" package
Annotation Annotation
12.4 years ago Joao Sollari Lopes ▴ 80
46,711 results • Page 527 of 935
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
Popular Question to Hervé Pagès 16k
Teacher to Michael Love 43k
Locations • All
Singapore, 2 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
European Union, 2 hours ago
United States, 2 hours ago
The city by the bay, 3 hours ago
Traffic: 1330 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6