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Help needed! What wrong with VariantAnnotation and TCGA vcfs
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Problem in Gap Filling in Metabolic networks
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Useful information about Ensembl release 71 mart databases
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DESeq: computing 95% CI for negative binomial distribution ?
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DESeq: computing 95% CI for negative binomial distribution ?
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Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
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EBImage: Minimum and Maximum intensity on the edge of an object
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updated 12.8 years ago by ▴ 550 • written 12.8 years ago by ▴ 40
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ensemblVEP: passing on coverage / frequency information
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brief quesion on DESeq2
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updated 12.8 years ago by ▴ 20 • written 12.8 years ago by 43k
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updated 12.8 years ago by 68k • written 12.8 years ago by ★ 1.3k
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error and warning message with blocked samples with Limma
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updated 12.8 years ago by 53k • written 12.8 years ago by ★ 2.0k
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12.8 years ago Guest User ★ 13k
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how to get the CEL files of CLL package
updated 12.8 years ago by 25k • written 12.8 years ago by ★ 2.0k
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it is strange that I cannot get the fpkm by using easyRNASeq
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updated 12.8 years ago by ▴ 30 • written 12.8 years ago by ★ 13k
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bioc package installation problem
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stringDist ?
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updated 12.8 years ago by 16k • written 12.8 years ago by ▴ 170
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Replace the ensemble annotation with UCSC knownGene track in library "GenomeGraphs"
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Question on unbalanced paired design
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updated 12.8 years ago by ★ 7.9k • written 12.8 years ago by ▴ 40
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replace the ensemble annotation with UCSC knownGene track in library "GenomeGraphs"
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updated 12.8 years ago by ▴ 570 • written 12.8 years ago by ▴ 290
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12.8 years ago Kathi Zarnack ▴ 110
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updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ▴ 440
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MethyLumiSet object
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12.8 years ago Tim Triche ★ 4.2k
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12.8 years ago Kasper Daniel Hansen ★ 6.5k
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updated 12.8 years ago by ★ 6.8k • written 12.8 years ago by ★ 11k
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updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 170
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Limma - Result output - Error - Help
updated 12.8 years ago by 53k • written 12.8 years ago by ▴ 30
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EdgeR - generating appropriate design and contrast matrix : multi-factorial experiment
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updated 12.8 years ago by 53k • written 12.8 years ago by ▴ 30
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Problem with Limma - Possible Limma/affy bug - minimal code not working
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12.8 years ago Michael Love 43k
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updated 12.8 years ago by 16k • written 12.8 years ago by ★ 11k
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Error: package ŒGenomicRanges¹ 1.11.45 was found, but >= 1.11.46 is required by ŒBSgenome¹
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12.8 years ago Ou, Jianhong ★ 1.3k
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Bioconductor Digest, Vol 122, Issue 5
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12.8 years ago W. Evan Johnson ▴ 870
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updated 12.8 years ago by ▴ 30 • written 12.8 years ago by 16k
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updated 12.8 years ago by ▴ 30 • written 12.8 years ago by ▴ 70
46,721 results • Page 546 of 935
Recent ...
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Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results by sup0903 • 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt by sebastianenewell • 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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