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1
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1.7k
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SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
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updated 12.8 years ago by ▴ 20 • written 12.8 years ago by ▴ 600
0
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5
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enabling reproducible research & R package management & install.package.version & BiocLite
updated 12.8 years ago by ▴ 170 • written 12.8 years ago by ★ 1.6k
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Retrieving all entrez identifiers that are annotated in KEGG pathways
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updated 12.8 years ago by ▴ 60 • written 12.8 years ago by 68k
0
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19
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illegal operand when I run DEXSeq
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updated 12.8 years ago by ★ 1.3k • written 12.8 years ago by ★ 13k
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ComBat: How to choose multiple covariates in ComBat analysis- Need advice
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12.8 years ago W. Evan Johnson ▴ 870
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Practical Workshop on High-Throughput Sequencing Data Analysis. 30 Sep - 4 Oct 2013, OIST, Okinawa, Japan
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Analysing grouped datasets in repitools
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N
12.8 years ago Sandeep Jose Joseph ▴ 10
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finding neigbouring intervals for 2 GRange objects
updated 12.8 years ago by ▴ 590 • written 12.8 years ago by ▴ 170
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import.chain: where are the chain files?
updated 12.8 years ago by 6.7k • written 12.8 years ago by ▴ 100
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Question: type of NOISeq package input file
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12.8 years ago Guest User ★ 13k
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Retrieving all entrez identifiers that are annotated in KEGG pathways
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updated 12.8 years ago by ▴ 60 • written 12.8 years ago by ★ 13k
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1.8k
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Crlmm package
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updated 12.8 years ago by ▴ 1000 • written 12.8 years ago by ▴ 400
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2
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multi-mapped reads: Cufflinks + baySeq? edgeR?
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12.8 years ago Guest User ★ 13k
0
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statistical test for pairwise comparison
12.8 years ago chris Jhon ▴ 260
0
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0
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A question about MAplot in the oligo package
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12.8 years ago He, Yiwen NIH/CIT ▴ 360
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annotationTools: character vector clean-up
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12.8 years ago Guido Hooiveld ★ 4.1k
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Normalization
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12.8 years ago Gordon Smyth 53k
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How to annotate Illumina HumanHT-12 v3 chips?
annotate annotate
12.8 years ago Feng Tian ▴ 110
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0
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problem with reading gpr files
12.8 years ago chawla ▴ 190
1
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0
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pileup coverage from BAM file
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12.8 years ago Martin Morgan 25k
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BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
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12.8 years ago Dan Tenenbaum ★ 8.2k
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workflow from NormqPCR 5.1 to 5.3
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12.8 years ago James Perkins ▴ 120
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easyRNA adapting annotations to avoid overlapping synthetic exons
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12.8 years ago delhomme@embl.de ★ 1.2k
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Visualization of alignments with mismatch bases
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updated 12.8 years ago by ▴ 420 • written 12.8 years ago by ★ 11k
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0
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easyRNA adapting annotations to avoid overlapping synthetic exons
Annotation Organism easyRNASeq Annotation Organism easyRNASeq
12.8 years ago Bayles, Darrell ▴ 10
0
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0
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SPIA algorithm organisms not included already in the SPIA package
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12.8 years ago Tarca, Adi ▴ 570
0
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2
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968
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annotationTools: character vector clean-up
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updated 12.8 years ago by ★ 7.9k • written 12.8 years ago by ★ 4.1k
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Normalization
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updated 12.8 years ago by ★ 7.9k • written 12.8 years ago by ▴ 40
0
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4
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Visualization of alignments with mismatch bases
updated 12.8 years ago by ▴ 420 • written 12.8 years ago by ★ 1.3k
0
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7
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BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
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updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ★ 13k
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2
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ComBat: How to choose multiple covariates in ComBat analysis- Need advice
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0
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workflow from NormqPCR 5.1 to 5.3
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12.8 years ago Guest User ★ 13k
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Bumphunter and minfi
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12.8 years ago Matthias Zilbauer ▴ 30
0
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pileup coverage from BAM file
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12.8 years ago Chris Cabanski ▴ 30
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query regarding memory allocation...please help
updated 12.8 years ago by 68k • written 12.8 years ago by ★ 13k
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0
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query regarding erroers
12.8 years ago Guest User ★ 13k
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Question on Analyzing Illumina 450k methylation data
methylumi methylumi
12.8 years ago Srinivas Srikanth ▴ 70
0
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normalized and Shift to 75.0 percentile
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12.8 years ago Paz Tapia Ramirez ▴ 40
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illegal operand when I run DEXSeq
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updated 12.8 years ago by ★ 13k • written 12.8 years ago by ★ 1.3k
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ChIPpeakAnno "examplePattern.fa" file
updated 12.8 years ago by ★ 4.3k • written 12.8 years ago by ▴ 80
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Problems with medianFilter in EBImage 4.0.0
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updated 12.8 years ago by ▴ 750 • written 12.8 years ago by ▴ 10
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aggregate genes in DEXSeq
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12.8 years ago Alejandro Reyes ★ 1.9k
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3
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writeFastq writing dashes instead of dots
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 20
0
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0
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vegan, accumulation curve
12.8 years ago Guest User ★ 13k
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1
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ties & strandedness in distanceToNearest GRanges
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updated 12.8 years ago by ★ 6.8k • written 12.8 years ago by ▴ 60
0
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flip strand of GappedAlignmentPairs Object
updated 12.8 years ago by ★ 6.8k • written 12.8 years ago by ▴ 360
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Reminder - VIB Nucleomics Core - User Meeting 2013
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12.8 years ago Rudy van Eijsden ▴ 40
46,699 results • Page 551 of 934
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Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by victor04052024 • 0
You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by victor04052024 • 0
The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…
Comment: segfault in edgeR glmQLFit by Gordon Smyth 53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0
I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Comment: segfault in edgeR glmQLFit by Mark • 0
Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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