0
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1
reply
4.6k
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Problem installing packages on new R
limma beadarray lumi arrayMvout limma beadarray lumi arrayMvout
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 10
0
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0
replies
786
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Boston Bioconductor Basics, April 4-5 2013
12.9 years ago Vincent J. Carey, Jr. 6.7k
0
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1
reply
674
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using suitable R version for Bioconductor
updated 12.9 years ago by ★ 8.2k • written 12.9 years ago by ★ 13k
0
votes
3
replies
1.1k
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curious behavior from VariantAnnotation 1.5.36
GO BSgenome BSgenome GO BSgenome BSgenome
12.9 years ago Tim Triche ★ 4.2k
0
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2
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2.2k
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find gene symbols immediately flanking before and after a SNP position
SNP SNP
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 220
0
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0
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edgeR GLM : family based experimental design
edgeR edgeR
12.9 years ago gianfilippo coppola ▴ 10
0
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1
reply
3.2k
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TMM Normalization without replicate
edgeR edgeR
updated 12.9 years ago by ▴ 880 • written 12.9 years ago by ★ 13k
0
votes
0
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Finding genes with minimal expression across a set of conditions?
ASSIGN ASSIGN
12.9 years ago Ryan C. Thompson ★ 7.9k
0
votes
2
replies
1.6k
views
Issues while installing RBGL package
RBGL RBGL
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 10
0
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2
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Extracting strand information from GenomicFeatures transcript db objects
TranscriptDb biomaRt TranscriptDb biomaRt
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 100
0
votes
3
replies
3.8k
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plotting BED intervals to TSS regions
12.9 years ago TriS ▴ 200
0
votes
1
reply
1.5k
views
(missing?) UCSCKG -> SYMBOL mappings in Homo.sapiens (etc.)
Organism GenomicFeatures Organism GenomicFeatures
updated 12.9 years ago by ★ 7.2k • written 12.9 years ago by ★ 4.2k
0
votes
3
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1.4k
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DiffBind - Scores for peakset are all the same
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updated 12.9 years ago by ★ 5.2k • written 12.9 years ago by ▴ 510
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0
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Bioinformatics Scientist
12.9 years ago Agnès Paquet ▴ 10
0
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0
replies
1.2k
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Fwd: iScan
beadarray beadarray
12.9 years ago Rajasree Menon ▴ 30
0
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3
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1.4k
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Differences in results analyzing Mouse Gene 1.0-ST using oligo and affy package
affy limma oligo affy limma oligo
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 20
0
votes
0
replies
1.3k
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Error Bars on EdgeR
qPCR qPCR
12.9 years ago Ian Sudbery ▴ 30
0
votes
7
replies
3.1k
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question about Gviz
Gviz Gviz
12.9 years ago Bogdan ▴ 670
0
votes
0
replies
1.6k
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Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt ideogram genomes zebrafish biomaRt ideogram genomes
12.9 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
2
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3.7k
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distanceToNearest in GenomicRanges
GenomicRanges GenomicRanges
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 60
0
votes
3
replies
2.5k
views
runSPIA() in graphite package
Pathways Breast siggenes PROcess cycle graphite Pathways Breast siggenes PROcess cycle
updated 12.9 years ago by ▴ 20 • written 12.9 years ago by ▴ 420
0
votes
1
reply
1.1k
views
DataFrame bug?
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 290
2
votes
3
replies
1.7k
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suppressing reduce() function when applying set operations to GRanges
updated 12.9 years ago by 16k • written 12.9 years ago by ▴ 20
0
votes
0
replies
1.6k
views
Loading eSet.r objects from ArrayExpress
ArrayExpress ArrayExpress
12.9 years ago Mirza, Nasir ▴ 40
0
votes
0
replies
641
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AUTO: Pie Müller is out of the office. (returning 18.02.2013)
12.9 years ago Pie.Mueller@unibas.ch ▴ 40
0
votes
2
replies
2.1k
views
EBImage: putting two images next to each others
updated 12.9 years ago by ▴ 60 • written 12.9 years ago by ★ 3.8k
0
votes
0
replies
805
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gage: essGene()
12.9 years ago Forst, Christian ▴ 90
1
vote
1
reply
3.8k
views
Aligning short reads to a single gene
updated 12.9 years ago by ★ 3.6k • written 12.9 years ago by ▴ 340
0
votes
0
replies
1.1k
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Introductory workshop for RNA-seq 27-28 March 2013, Torino, Italy
Network oneChannelGUI Network oneChannelGUI
12.9 years ago raffaele calogero ▴ 500
1
vote
3
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VariantAnnotation package with snp location
SNP VariantAnnotation VariantAnnotation SNP VariantAnnotation VariantAnnotation
updated 12.9 years ago by ★ 4.2k • written 12.9 years ago by ▴ 970
0
votes
1
reply
1.1k
views
counting BAM reads in a set of genomic regions
updated 12.9 years ago by 25k • written 12.9 years ago by ▴ 200
0
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1
reply
1.3k
views
problem with GDS2eSet function in GEOquery package
updated 12.9 years ago by 68k • written 12.9 years ago by ★ 13k
0
votes
0
replies
426
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quick question about rCytoscape
12.9 years ago Ou, Jianhong ★ 1.3k
0
votes
2
replies
1.4k
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Gene Ontologies exploration
goProfiles GeneAnswers goProfiles GeneAnswers
updated 12.9 years ago by ★ 7.2k • written 12.9 years ago by ▴ 310
0
votes
0
replies
1.6k
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structure of cfx file for HTqPCR
Microarray qPCR cycle HTqPCR Microarray qPCR cycle HTqPCR
12.9 years ago Guest User ★ 13k
0
votes
2
replies
2.6k
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gmapR/gsnap crashes
gmapR gmapR
updated 12.9 years ago by ★ 11k • written 12.9 years ago by ★ 4.2k
0
votes
1
reply
932
views
Required Annotation Package for Agilent-021974
Annotation Annotation
updated 12.9 years ago by ★ 4.2k • written 12.9 years ago by ▴ 20
0
votes
0
replies
1.9k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray qPCR HTqPCR a4 Microarray qPCR HTqPCR a4
12.9 years ago b1gorsuch@comcast.net ▴ 20
0
votes
2
replies
7.8k
views
Filtering out tags with low counts in edgeR results in fewer differentially expressed genes.....
edgeR edgeR
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 30
0
votes
10
replies
2.3k
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Agilent Mouse 8x60K array
affy affy
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 60
0
votes
1
reply
853
views
rtracklayer weirdness
BSgenome BSgenome rtracklayer BSgenome BSgenome rtracklayer
updated 12.9 years ago by ★ 11k • written 12.9 years ago by ★ 4.2k
0
votes
1
reply
3.7k
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a diffBind problem
Cancer edgeR DiffBind Cancer edgeR DiffBind
12.9 years ago Rory Stark ★ 5.2k
0
votes
7
replies
2.7k
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Detecting differential usage of introns from RNA-seq data.
DEXSeq DEXSeq
updated 12.9 years ago by ★ 1.9k • written 12.9 years ago by ▴ 320
0
votes
13
replies
3.0k
views
statistical test for time course data
Cancer limma edgeR Cancer limma edgeR
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 260
0
votes
1
reply
2.2k
views
limma-voom and y$E
Normalization limma PROcess Normalization limma PROcess
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 240
0
votes
4
replies
1.8k
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genome_intervals and GRange objects/HiTC package
Annotation HiTC Annotation HiTC
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 170
0
votes
1
reply
1.5k
views
DiffBind error loading dba.count
DiffBind DiffBind
updated 12.9 years ago by ▴ 670 • written 12.9 years ago by ★ 5.2k
0
votes
1
reply
1.6k
views
DESeq Design issue
DESeq DESeq
updated 12.9 years ago by ★ 3.8k • written 12.9 years ago by ★ 13k
0
votes
1
reply
867
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useDevel() not working
updated 12.9 years ago by ★ 8.2k • written 12.9 years ago by ▴ 110
0
votes
0
replies
1.1k
views
How to pool subgroups for makeContrasts() and subsequent limma analysis?
12.9 years ago René ▴ 40
46,699 results • Page 554 of 934
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