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Creation
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Views
Votes
0
votes
0
replies
1.2k
views
Installing packages
13.0 years ago
Andrés
▴ 10
0
votes
11
replies
4.5k
views
Turning a GRanges Metadata Column into Rle List
updated 13.0 years ago by
Aaron Statham
▴ 40 • written 13.0 years ago by
Dario Strbenac
★ 1.6k
0
votes
3
replies
2.8k
views
ComBat
Microarray
sva
Microarray
sva
updated 13.0 years ago by
Valerie Obenchain
★ 6.8k • written 13.0 years ago by
Gayatri Iyer
▴ 20
0
votes
1
reply
947
views
Empty Granges
BSgenome
BSgenome
BSgenome
BSgenome
updated 13.0 years ago by
Valerie Obenchain
★ 6.8k • written 13.0 years ago by
Marco Lo Iacono
▴ 10
0
votes
2
replies
2.2k
views
getSequence from biomaRt changes the order of sequences given as input - is it normal?
Yeast
biomaRt
Yeast
biomaRt
updated 13.0 years ago by
Steffen Durinck
▴ 540 • written 13.0 years ago by
Emmanuel Levy
▴ 270
0
votes
1
reply
1.1k
views
IMA Peak Correction Error - subscript out of bounds
Annotation
PROcess
Annotation
PROcess
updated 13.0 years ago by
Dan Tenenbaum
★ 8.2k • written 13.0 years ago by
Guest User
★ 13k
2
votes
1
reply
2.1k
views
GeneFeatureSet
oligo
oligo
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
Shahenda El-Naggar
▴ 20
0
votes
0
replies
1.1k
views
Overrepresentation pathway with KEGGPROFILE and SPIA
Proteomics
Pathways
KEGGprofile
Proteomics
Pathways
KEGGprofile
13.0 years ago
slzhao
▴ 10
0
votes
0
replies
1.5k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
13.0 years ago
Pan Du
▴ 440
0
votes
0
replies
1.6k
views
Bioconductor Digest, Vol 119, Issue 5: Overrepresentation pathway with KEGGPROFILE and SPIA
Pathways
SPIA
KEGGprofile
Pathways
SPIA
KEGGprofile
13.0 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
960
views
Computer for the analysis of high-throughput genomic data
Sequencing
Microarray
GO
Network
Cancer
Sequencing
Microarray
GO
Network
Cancer
13.0 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
3.5k
views
setting contrast in edgeR
updated 13.0 years ago by
Ryan C. Thompson
★ 7.9k • written 13.0 years ago by
Alpesh Querer
▴ 220
0
votes
6
replies
1.5k
views
status of visnab
updated 13.0 years ago by
Dan Tenenbaum
★ 8.2k • written 13.0 years ago by
Abhishek Pratap
▴ 410
0
votes
28
replies
3.9k
views
countMatches() (was: table for GenomicRanges)
Cancer
IRanges
Cancer
IRanges
updated 13.0 years ago by
Michael Lawrence
★ 11k • written 13.0 years ago by
Hervé Pagès
16k
0
votes
1
reply
1.3k
views
significance of correlation genes/miRNAs expression
miRNA
Microarray
miRNA
Microarray
updated 13.0 years ago by
Paul Geeleher
★ 1.3k • written 13.0 years ago by
TriS
▴ 200
0
votes
8
replies
2.1k
views
limma, voom, weights: factorial versus nested interaction results
updated 13.0 years ago by
Gordon Smyth
53k • written 13.0 years ago by
Reiner Schulz
▴ 40
0
votes
0
replies
779
views
detailed analysis process of "Comparisons Both Between and Within Subjects" of edgeR
PROcess
edgeR
PROcess
edgeR
13.0 years ago
Huajing Teng
▴ 20
0
votes
0
replies
1.2k
views
Overrepresentation pathway with KEGGPROFILE and SPIA
SPIA
SPIA
13.0 years ago
gregory voisin
▴ 430
0
votes
1
reply
2.1k
views
GLM in DEseq
DESeq
DESeq
updated 13.0 years ago by
Simon Anders
★ 3.8k • written 13.0 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
error message relating to png file when running maQualityPlots
AnnBuilder
AnnBuilder
updated 13.0 years ago by
Dan Tenenbaum
★ 8.2k • written 13.0 years ago by
Yanqing Hu
▴ 20
0
votes
2
replies
3.0k
views
error message relating to png file when running maQualityPlots
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
Bioconductor Digest, Vol 119, Issue 1
Preprocessing
Homo sapiens
affy
oligo
RPA
Preprocessing
Homo sapiens
affy
oligo
RPA
updated 13.0 years ago by
w langdon
▴ 20 • written 13.0 years ago by
Leo Lahti
▴ 40
0
votes
1
reply
773
views
RankAggreg package
miRNA
miRNA
updated 13.0 years ago by
Dan Tenenbaum
★ 8.2k • written 13.0 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
Error in Installing BioBase Development version
updated 13.0 years ago by
Dan Tenenbaum
★ 8.2k • written 13.0 years ago by
Paul Leo
▴ 970
0
votes
2
replies
1.6k
views
normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer
Homo sapiens
affy
Cancer
Homo sapiens
affy
updated 13.0 years ago by
w langdon
▴ 20 • written 13.0 years ago by
Martin Morgan
25k
0
votes
4
replies
1.3k
views
transcriptsBy via TxDb.Hsapiens.UCSC.hg19.knownGene painfully slow
updated 13.0 years ago by
Martin Morgan
25k • written 13.0 years ago by
Murat Tasan
▴ 70
0
votes
4
replies
1.4k
views
Bioconductor Cloud AMI
updated 13.0 years ago by
Martin Morgan
25k • written 13.0 years ago by
Rohmatul Fajriyah
▴ 190
0
votes
0
replies
1.0k
views
normalise many cel files TCBB-2007-11-0161_noCEL.tar
Homo sapiens
affy
Homo sapiens
affy
13.0 years ago
Guest User
★ 13k
0
votes
3
replies
2.9k
views
Installing packages
updated 13.0 years ago by
Dan Tenenbaum
▴ 60 • written 13.0 years ago by
Rohmatul Fajriyah
▴ 190
0
votes
4
replies
1.7k
views
Computer for the analysis of high-throughput genomic data
updated 13.0 years ago by
Steve Lianoglou
★ 13k • written 13.0 years ago by
Capurro, Alberto Dr.
▴ 30
0
votes
1
reply
1.4k
views
normalization of illumina bead array data
PROcess
PROcess
13.0 years ago
Michele
▴ 90
0
votes
2
replies
3.4k
views
flowCore: modifying exprs of a flowFrame
flowCore
flowCore
updated 13.0 years ago by
Valerie Obenchain
★ 6.8k • written 13.1 years ago by
Ariful Azad
▴ 10
0
votes
0
replies
1.2k
views
About Rstudio via Amazon web services.
GO
KEGGprofile
GO
KEGGprofile
13.0 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.9k
views
Error message with transcriptCounts(easyRNASeq) performed with gtf file generated with cuffmerge
RNASeq
Annotation
Normalization
Cancer
Organism
BSgenome
BSgenome
easyRNASeq
RNASeq
13.0 years ago
Richard Friedman
★ 2.0k
0
votes
0
replies
856
views
Bioconductor Digest, Vol 118, Issue 25
13.0 years ago
federico.comoglio
▴ 100
0
votes
10
replies
2.6k
views
Kegg Profile package problem
GO
KEGGprofile
GO
KEGGprofile
13.0 years ago
gregory voisin
▴ 430
0
votes
1
reply
1.1k
views
How to correlate a vector with matrix, then output average cor and its SD
updated 13.0 years ago by
Dan Tenenbaum
★ 8.2k • written 13.0 years ago by
刘伟
▴ 30
0
votes
1
reply
1.5k
views
Counting intervals with or without GRange
updated 13.0 years ago by
Steve Lianoglou
★ 13k • written 13.0 years ago by
Hermann Norpois
▴ 110
0
votes
2
replies
1.3k
views
Counting number of intervals with or without GRange
updated 13.0 years ago by
Martin Morgan
25k • written 13.0 years ago by
Hermann Norpois
▴ 110
0
votes
0
replies
1.2k
views
[Bioconductor] normalization of illumina bead array data
PROcess
PROcess
13.0 years ago
Michele
▴ 90
0
votes
1
reply
1.6k
views
Can Bioconductor be used offline?
gcrma
gcrma
updated 13.0 years ago by
Wolfgang Huber
★ 13k • written 13.0 years ago by
Fedor Syagin
▴ 10
0
votes
6
replies
1.8k
views
bout big data set for Affy R packge
affy
affy
updated 13.0 years ago by
Stephen Piccolo
▴ 600 • written 13.0 years ago by
刘伟
▴ 30
0
votes
1
reply
1.8k
views
Minimal input data format for bsseq
Sequencing
Alignment
bsseq
Sequencing
Alignment
bsseq
updated 13.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 13.0 years ago by
Martin Aryee
▴ 20
0
votes
5
replies
3.2k
views
problem with manipulating graphs created from dot files read by agread()
Rgraphviz
Rgraphviz
updated 13.0 years ago by
Paul Murrell
▴ 30 • written 13.0 years ago by
Alexis Dinno
▴ 20
0
votes
0
replies
1.3k
views
HTqPCR, changeCtLayout is mislabeling the rows and is unable to return a qPCRset object
a4
a4
13.0 years ago
Guest User
★ 13k
0
votes
3
replies
2.4k
views
Error: package/namespace load failed for ‘affycoretools
GO
GUI
Cancer
GO
GUI
Cancer
updated 13.0 years ago by
Steve Lianoglou
★ 13k • written 13.0 years ago by
Richard Friedman
★ 2.0k
0
votes
1
reply
914
views
question about KEGGSOAP package
updated 13.0 years ago by
Paul Shannon
▴ 750 • written 13.0 years ago by
Marinkovic Tijana
▴ 10
0
votes
0
replies
780
views
Fwd: bout big data set for Affy R packge
affy
affy
13.0 years ago
刘伟
▴ 30
0
votes
1
reply
1.4k
views
DiffBind error
DiffBind
DiffBind
updated 13.0 years ago by
José Luis Lavín
▴ 280 • written 13.0 years ago by
Gord Brown
▴ 670
0
votes
4
replies
1.4k
views
error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)
Annotation
GO
ArrayTools
Annotation
GO
ArrayTools
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
José LÓPEZ
▴ 110
46,699 results • Page
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Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ATpoint
★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open!
by
TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data
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TikTsokaasocissalpc
• 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
• 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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