4
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5
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1.6k
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error when running paCalls
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updated 14.3 years ago by ★ 6.8k • written 14.3 years ago by ▴ 30
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HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"
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updated 14.3 years ago by 16k • written 14.3 years ago by ★ 1.6k
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updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 760
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14.3 years ago Simon Anders ★ 3.8k
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3
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ask for your help about some questions of using edgeR
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14.3 years ago Zhenling Peng ▴ 30
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updated 14.3 years ago by ★ 6.8k • written 14.3 years ago by ▴ 80
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Bioinformatics Research Scientist Position at University of Georgia
14.3 years ago Noah Cohen ▴ 50
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unique human genomic regions
14.3 years ago km ▴ 100
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RNA seq analysis of Arabidopsis genome
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updated 14.3 years ago by ▴ 50 • written 14.3 years ago by ▴ 10
0
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using illuminaMousev2BeadID.bd
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14.3 years ago nac ▴ 280
0
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Customize normalization on specific time series experiment?
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14.3 years ago Andrea Grilli ▴ 240
0
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6
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[Bioc-devel] XML package downloading problem with bioconductor.org
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updated 14.3 years ago by ▴ 50 • written 14.3 years ago by 6.7k
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XML package downloading problem with bioconductor.org
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14.3 years ago Liu,Bin ▴ 50
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1
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updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 80
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Biobase use problem
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HTqPCR
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14.4 years ago • updated 14.3 years ago Heidi Dvinge ★ 2.0k
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array names in arrayQualityMetrics report
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14.3 years ago rchavez ▴ 20
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1.7k
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arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
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updated 14.3 years ago by 25k • written 14.3 years ago by ▴ 20
0
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1.0k
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[Bioc-devel] DNS problem with bioconductor.org
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14.3 years ago Olga Vitek ▴ 40
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vsn on vsn
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updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 760
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p.adjust BH generates duplicate values
updated 14.3 years ago by 53k • written 14.3 years ago by ▴ 10
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DNS problem with bioconductor.org
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updated 14.3 years ago by ▴ 20 • written 14.3 years ago by ▴ 160
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14.3 years ago viritha kaza ▴ 580
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updated 14.3 years ago by 6.7k • written 14.3 years ago by ★ 4.2k
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12
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more stupid *Ranges questions...
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updated 14.3 years ago by ★ 11k • written 14.3 years ago by ★ 4.2k
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SPIA package
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14.3 years ago Jing Huang ▴ 380
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fRMA error when using exprs()
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14.3 years ago SylvainBrohée ▴ 50
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updated 14.3 years ago by ★ 13k • written 14.3 years ago by ▴ 20
0
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strand consistency with readAligned, coverage and transcriptsBy
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updated 14.3 years ago by ★ 13k • written 14.3 years ago by ▴ 220
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9
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process one color microarray
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updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 150
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how to get probe ids??
Microarray probe affy Microarray probe affy
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 40
0
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lumi and/or beadarray for getting beadSummary
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updated 14.3 years ago by ★ 6.6k • written 14.4 years ago by ★ 1.4k
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ShortRead error when reading BAM file
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updated 14.3 years ago by 25k • written 14.3 years ago by ▴ 650
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[XPS] detection call using MAS5 and DABG
xps xps
updated 14.3 years ago by ★ 3.9k • written 14.3 years ago by ▴ 50
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problem with lumiR.batch log2 transformation
probe probe
14.3 years ago Briggs, Chris ▴ 20
0
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Problem loading Rgraphviz
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updated 14.3 years ago by ★ 8.2k • written 14.3 years ago by ▴ 10
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rsamtools scanBcf segfault
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14.3 years ago Valerie Obenchain ★ 6.8k
0
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0
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Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics Metabolomics Pathways Cancer Genetics Metabolomics Pathways Cancer
14.3 years ago Emilie Bard ▴ 10
0
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1
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968
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updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 150
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question for you on SPIA package
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14.3 years ago Tarca, Adi ▴ 570
0
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0
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HTqPCR - TLDA analysis doubt
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2
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Problem_retrieving raw dataset from CEL files
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 60
0
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Map GO terms to Uniprot from org.Hs.eg
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 10
0
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1.0k
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How to create annotation package for not a supported organism
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updated 14.3 years ago by ★ 6.8k • written 14.4 years ago by ▴ 90
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Differential Gene expression analysis help
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updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 200
0
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question on DEXSeq package
DEXSeq DEXSeq
updated 14.3 years ago by 6.7k • written 14.3 years ago by ▴ 10
46,717 results • Page 618 of 935
Recent ...
Replies
Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 20
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Votes
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
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