0
votes
2
replies
1.1k
views
Agilent G4131F annotatin package
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0
votes
5
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5.0k
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GSEA and edgeR
GO edgeR GO edgeR
updated 14.4 years ago by 53k • written 14.4 years ago by ▴ 930
0
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1
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1.3k
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edgeR
edgeR edgeR
updated 14.4 years ago by 53k • written 14.4 years ago by ▴ 20
0
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4
replies
2.1k
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R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Breast Prostate probe Category xps Annotation Normalization xps
updated 14.4 years ago by ★ 3.9k • written 14.4 years ago by ▴ 80
0
votes
2
replies
1.7k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 14.4 years ago by ▴ 40 • written 14.4 years ago by ★ 7.2k
0
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2
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EBImage crop failure
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updated 14.4 years ago by ▴ 20 • written 14.4 years ago by ▴ 310
0
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0
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2.2k
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4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
14.4 years ago mattia pelizzola ▴ 200
1
vote
0
replies
1.3k
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problem in read in file with GEOquery library
hgu133a GEOquery hgu133a GEOquery
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0
votes
3
replies
1.6k
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Combining GEOquery with samr or siggenes
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14.4 years ago Voke AO ▴ 760
0
votes
1
reply
1.4k
views
Bioconductor Digest, Vol 102, Issue 29
RNASeq edgeR RNASeq edgeR
updated 14.4 years ago by ▴ 20 • written 14.4 years ago by ▴ 20
0
votes
4
replies
3.3k
views
shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA
updated 14.4 years ago by ★ 11k • written 14.4 years ago by ▴ 100
1
vote
0
replies
1.3k
views
problem in read in file with GEOquery library
hgu133a GEOquery hgu133a GEOquery
14.4 years ago Zhe Liu ▴ 90
0
votes
2
replies
5.4k
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edgeR: handling missing values with Quantile normalisation
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updated 14.4 years ago by ▴ 970 • written 14.4 years ago by ▴ 20
0
votes
0
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1.4k
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topTable (fit) annotation
Annotation GO Homo sapiens annotate limma GEOquery Annotation GO Homo sapiens annotate
14.4 years ago Jing Huang ▴ 380
0
votes
5
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2.4k
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topTable (fit) annotation
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updated 14.4 years ago by 21k • written 14.4 years ago by ▴ 380
0
votes
0
replies
1.0k
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microarray data analysis treatments and design
14.4 years ago Jing Huang ▴ 380
0
votes
1
reply
1.3k
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DESeq: nbinomTest question
DESeq DESeq
updated 14.4 years ago by ★ 3.8k • written 14.4 years ago by ▴ 440
0
votes
2
replies
2.4k
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GEOquery package
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updated 14.4 years ago by ▴ 150 • written 14.4 years ago by ▴ 380
0
votes
0
replies
1.2k
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FW: GEOquery package
Normalization GEOquery Normalization GEOquery
14.4 years ago Ochsner, Scott A ▴ 60
0
votes
9
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3.2k
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backgroundCorrect offset value
updated 14.4 years ago by 53k • written 14.4 years ago by ▴ 150
0
votes
0
replies
1.5k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
14.4 years ago Olivier Lucas ▴ 40
0
votes
3
replies
2.3k
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Problem with Biostrings
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14.4 years ago Guido Leoni ▴ 200
0
votes
0
replies
1.2k
views
FW: normalization one color microarrays
Normalization hgug4112a PROcess Agi4x44PreProcess Normalization hgug4112a PROcess
14.4 years ago Paz Tapia Ramirez ▴ 150
0
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1
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1.8k
views
justRMA {affy} error
Annotation ExperimentData cdf Annotation ExperimentData cdf
updated 14.4 years ago by 25k • written 14.4 years ago by ▴ 10
0
votes
2
replies
1.8k
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bug in rendering reciprocal edges?
Network graph Rgraphviz Network graph Rgraphviz
updated 14.4 years ago by ▴ 340 • written 14.4 years ago by ▴ 20
0
votes
3
replies
1.1k
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rtracklayer import.bed pipe inconsistency
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updated 14.4 years ago by ★ 11k • written 14.4 years ago by ▴ 20
0
votes
0
replies
810
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which DESeq result is more reliable?????
GO GO
14.4 years ago pushp priya ▴ 10
0
votes
2
replies
2.0k
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ChIPpeakAnno, getAnnotation question
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14.4 years ago Julie Zhu ★ 4.3k
0
votes
9
replies
2.5k
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normalization one color microarrays
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updated 14.4 years ago by ▴ 150 • written 14.4 years ago by ▴ 150
0
votes
3
replies
6.4k
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median normalization
Microarray Normalization Microarray Normalization
updated 14.4 years ago by 68k • written 14.4 years ago by ▴ 580
0
votes
0
replies
800
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Package Rsamtools_1.0.8.tar.gz has been checked and built
14.4 years ago Uwe.Ligges@r-project.org ▴ 120
0
votes
0
replies
1.4k
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backgroundCorrect offset value
Microarray limma Microarray limma
14.4 years ago Gordon Smyth 53k
0
votes
0
replies
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GAGE package help required
Pathways gage Pathways gage
14.4 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
891
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SimpleAffy qc step for custom CDF files
cdf cdf
14.4 years ago Ahmed, Rizwan ▴ 10
0
votes
0
replies
904
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EBImage crop failure
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14.4 years ago Michael Cole ▴ 20
0
votes
0
replies
1.3k
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Question about 'updateCel' from package 'affxparser'
cdf PROcess affxparser cdf PROcess affxparser
14.4 years ago Henrik Bengtsson ★ 2.4k
0
votes
3
replies
1.6k
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limma: paired analysis & effects on/interpretation of coefficients
GO affy limma GO affy limma
updated 14.4 years ago by 68k • written 14.4 years ago by ★ 4.1k
0
votes
2
replies
1.5k
views
affylmGUI annotations
Annotation annotate affylmGUI Annotation annotate affylmGUI
updated 14.4 years ago by ★ 2.0k • written 14.4 years ago by ▴ 30
0
votes
1
reply
917
views
[limma] 0 weights = removed from analysis?
limma limma
updated 14.4 years ago by 53k • written 14.4 years ago by ▴ 740
0
votes
0
replies
1.5k
views
Bioinformatics position in CIAT, Colombia
Sequencing Annotation Sequencing Annotation
14.4 years ago Sarah Ayling ▴ 10
0
votes
0
replies
1.9k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
14.4 years ago stefano iacus ▴ 430
0
votes
0
replies
895
views
Incorporating direct arrays to reference design
14.4 years ago boczniak767 ▴ 740
0
votes
1
reply
1.2k
views
xps: root scheme annotations
Annotation xps Annotation xps
updated 14.4 years ago by ★ 3.9k • written 14.4 years ago by ▴ 30
0
votes
2
replies
1.8k
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question on SPIA pavkage application
Organism SPIA Organism SPIA
updated 14.4 years ago by ▴ 150 • written 14.4 years ago by ▴ 380
0
votes
2
replies
1.2k
views
question on library(mgu74av2.db) for SPIA package application
Annotation Annotation
updated 14.4 years ago by ▴ 150 • written 14.4 years ago by ▴ 380
0
votes
6
replies
2.7k
views
rtracklayer::liftOver ordering
updated 14.4 years ago by ★ 11k • written 14.4 years ago by ▴ 120
0
votes
4
replies
840
views
Biocinstall
updated 14.4 years ago by 6.7k • written 14.4 years ago by 68k
0
votes
1
reply
1.5k
views
a question on SPIA package
Microarray SPIA Microarray SPIA
updated 14.4 years ago by ▴ 650 • written 14.4 years ago by ▴ 380
0
votes
2
replies
2.1k
views
organism abbreviations (SPIA package)
Microarray Organism SPIA Microarray Organism SPIA
updated 14.4 years ago by ▴ 340 • written 14.4 years ago by ▴ 380
0
votes
1
reply
1.6k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 14.4 years ago by ★ 2.0k • written 14.5 years ago by ★ 4.1k
46,734 results • Page 620 of 935
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Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by TikTs3a3ssalpc • 0
In the Gviz package, individual exon styles like line width or font color are usually global, much like how the Massar Service centralizes …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
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As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
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Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
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Jumping in on this - all this started because we want to "do it right", i.e. avoiding the post-hoc filtering on the logFC (which is still w…
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