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0
votes
0
replies
1.4k
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methylumiSet - normalization
methylumi
methylumi
15.6 years ago
Noemi Andor
▴ 100
0
votes
3
replies
1.6k
views
mouse transcriptome
updated 15.6 years ago by
Heidi Dvinge
★ 2.0k • written 15.6 years ago by
rna seq
▴ 90
0
votes
2
replies
1.0k
views
subset GEO data by platform
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
Jeremiah H. Savage
▴ 110
0
votes
0
replies
1.9k
views
Which package for gene expression correlation analysis
Cancer
affy
Cancer
affy
15.6 years ago
Naomi Altman
★ 6.0k
0
votes
8
replies
1.9k
views
Affymetrix HG U295 support in BioC?
cdf
affy
xps
cdf
affy
xps
15.6 years ago
Sole Acha, Xavi
▴ 110
0
votes
0
replies
1.0k
views
methylumi normalization
15.6 years ago
Noe Andor
▴ 70
0
votes
1
reply
2.8k
views
R package modreg
updated 15.6 years ago by
Joern Toedling
▴ 450 • written 15.6 years ago by
Arunava Chakravartty
▴ 50
0
votes
1
reply
1.9k
views
dynamic library() calls
GEOmetadb
GEOmetadb
15.6 years ago
Jeremiah H. Savage
▴ 110
0
votes
0
replies
897
views
Agi4x44 PreProcessing for GSE11682 Data Set
PROcess
PROcess
15.6 years ago
Sathe, Tejas
▴ 20
0
votes
0
replies
1.1k
views
flowQ : qaProcess.* functions errors
15.6 years ago
Ewelina Bakala
▴ 20
0
votes
0
replies
1.6k
views
TR: HTqPCR package using the Biomark Fluidigm 96.96 array
Normalization
Normalization
15.6 years ago
Heidi Dvinge
★ 2.0k
0
votes
7
replies
1.9k
views
edgeR question
edgeR
edgeR
updated 15.6 years ago by
Gordon Smyth
53k • written 15.6 years ago by
王喆
▴ 60
0
votes
0
replies
1.1k
views
limma matrix design for biological replicates.
Cancer
Breast
limma
Cancer
Breast
limma
15.6 years ago
Gordon Smyth
53k
1
vote
0
replies
2.9k
views
dispersion in edgeR
Sequencing
edgeR
15.6 years ago • updated 3.6 years ago
Gordon Smyth
53k
0
votes
2
replies
2.1k
views
How to make my own GO.db?
GO
goProfiles
GO
goProfiles
updated 15.6 years ago by
Marc Carlson
★ 7.2k • written 15.6 years ago by
Xiaohui Wu
▴ 280
0
votes
4
replies
1.7k
views
error in function reduce from girafe
Annotation
annotate
biomaRt
IRanges
girafe
Annotation
annotate
biomaRt
IRanges
girafe
updated 15.6 years ago by
Joern Toedling
▴ 450 • written 15.6 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
932
views
limma matrix design for biological replicates.
Cancer
Breast
limma
Cancer
Breast
limma
15.6 years ago
neeraj rana
▴ 100
0
votes
0
replies
1.1k
views
Bioinformatic Core Facility wiki at SIB
Proteomics
Proteomics
15.6 years ago
Francesco Mancuso
▴ 40
0
votes
2
replies
1.3k
views
Querying/manipulating JASPAR data
Transcription
Cancer
Transcription
Cancer
updated 15.6 years ago by
Thomas Girke
★ 1.7k • written 15.6 years ago by
Steve Lianoglou
★ 13k
0
votes
0
replies
1.2k
views
Heatmap.2 scale problems: Sacling inside the function gives different results than scaling outside!!!
15.6 years ago
Elmer Fernández
▴ 80
0
votes
0
replies
1.1k
views
ChIPpeakAnno Paper - Example Dataset not found
Transcription
ChIPSeq
Annotation
chipseq
genomes
Transcription
ChIPSeq
Annotation
chipseq
15.6 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.4k
views
Adding metadata to FCS files
15.6 years ago
Josef Spidlen
▴ 140
0
votes
0
replies
867
views
flowcore
flowCore
flowCore
15.6 years ago
Perry_D_Haaland@bd.com
▴ 50
0
votes
1
reply
1.8k
views
How to cluster genes based on their GO term in Arabidopsis?
GO
Cancer
Prostate
goProfiles
GO
Cancer
Prostate
goProfiles
updated 15.6 years ago by
James W. MacDonald
68k • written 15.6 years ago by
Xiaohui Wu
▴ 280
0
votes
1
reply
1.6k
views
Problem with chromLoc object.
Organism
hgu133plus2
reb
Organism
hgu133plus2
reb
updated 15.6 years ago by
Furge, Kyle
▴ 210 • written 15.6 years ago by
Sathe, Tejas
▴ 20
0
votes
1
reply
2.5k
views
Reading Illumina IDAT files
crlmm
crlmm
updated 15.6 years ago by
Matthew Ritchie
▴ 1000 • written 15.6 years ago by
Mark Cowley
▴ 910
0
votes
1
reply
1.3k
views
biomaRt: error using dataset from HapMap_rel27 mart
SNP
biomaRt
SNP
biomaRt
updated 15.6 years ago by
Steffen
▴ 500 • written 15.6 years ago by
Brad McNeney
▴ 10
0
votes
3
replies
1.6k
views
methylumi
probe
beadarray
probe
beadarray
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
Noemi Andor
▴ 100
0
votes
1
reply
1.5k
views
Biostrings - size limits
updated 15.6 years ago by
Steve Lianoglou
★ 13k • written 15.6 years ago by
Erik Wright
▴ 210
0
votes
1
reply
1.3k
views
package RMySQL
updated 15.6 years ago by
James W. MacDonald
68k • written 15.6 years ago by
L. Mohammadi
▴ 40
0
votes
0
replies
779
views
get BP GOterm from geneID
GO
PROcess
GO
PROcess
15.6 years ago
Yuan Jian
▴ 250
0
votes
3
replies
1.6k
views
arrayQualityMetrics problem with Agilent 2-colour
limma
limma
updated 15.6 years ago by
Audrey Kauffmann
▴ 110 • written 15.6 years ago by
Edwin Groot
▴ 230
0
votes
0
replies
1.3k
views
flowStats: lymphGate Issue, plotting the results?
Cancer
flowStats
Cancer
flowStats
15.6 years ago
Chao-Jen Wong
▴ 580
0
votes
3
replies
2.1k
views
flowStats quadrantGate and rangeGate Question
flowStats
flowStats
updated 15.6 years ago by
Chao-Jen Wong
▴ 580 • written 15.6 years ago by
Aric Gregson
▴ 270
0
votes
0
replies
2.0k
views
logFC in edgeR
edgeR
edgeR
15.6 years ago
Davis McCarthy
▴ 260
0
votes
1
reply
786
views
limma, contrasts and affymetrix query
limma
limma
updated 15.6 years ago by
James W. MacDonald
68k • written 15.6 years ago by
Iain Gallagher
▴ 930
0
votes
2
replies
1.3k
views
Regarding ScISI
Yeast
ScISI
Yeast
ScISI
updated 15.6 years ago by
Marc Carlson
★ 7.2k • written 15.6 years ago by
anupam sinha
▴ 270
0
votes
1
reply
1.0k
views
MAS5.0 and dChip syntax using expresso()
updated 15.6 years ago by
Moshe Olshansky
▴ 120 • written 15.6 years ago by
array chip
▴ 420
0
votes
3
replies
2.0k
views
identical output plots for NUSE AND RLE
GO
Cancer
affyPLM
GO
Cancer
affyPLM
updated 15.6 years ago by
Paolo Innocenti
▴ 320 • written 15.6 years ago by
Richard Friedman
★ 2.0k
0
votes
2
replies
2.1k
views
hyperGTest(paramsGO)
Annotation
GO
Annotation
GO
updated 15.6 years ago by
James W. MacDonald
68k • written 15.6 years ago by
Yuan Jian
▴ 250
0
votes
2
replies
1.8k
views
proposed: a bridge between R and Cytoscape
Visualization
Network
graph
Visualization
Network
graph
updated 15.6 years ago by
Steve Lianoglou
★ 13k • written 15.6 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1000
views
edgeR
edgeR
edgeR
15.6 years ago
David
▴ 860
0
votes
1
reply
879
views
A bridge between Cytoscape and R
15.6 years ago
Perry_D_Haaland@bd.com
▴ 50
0
votes
4
replies
4.8k
views
biomaRt connection problems
biomaRt
biomaRt
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
michael watson IAH-C
★ 3.4k
0
votes
1
reply
1.1k
views
selection of dif.exp.genes defining FDR in SAM
updated 15.6 years ago by
Holger Schwender
▴ 900 • written 15.6 years ago by
Hernando Martínez
▴ 100
0
votes
1
reply
1.6k
views
limma Agilent Normalization
Normalization
CGH
Normalization
CGH
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
Noemi Andor
▴ 100
0
votes
0
replies
1.3k
views
blast
15.6 years ago
array chip
▴ 420
0
votes
2
replies
1.4k
views
Reading SMD data in limma
limma
ArrayExpress
limma
ArrayExpress
15.6 years ago
Gordon Smyth
53k
0
votes
6
replies
1.9k
views
xps and unifilter; Error: UnitID not found; error in function ‘ExportData’
PROcess
PROcess
updated 15.6 years ago by
cstrato
★ 3.9k • written 15.6 years ago by
John Coulthard
▴ 170
0
votes
1
reply
1.3k
views
Reading SMD data in limma
limma
ArrayExpress
limma
ArrayExpress
updated 15.6 years ago by
Budhayash Gautam
▴ 90 • written 15.6 years ago by
Rohit Farmer
▴ 170
46,726 results • Page
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Martin Morgan
25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
ATpoint
★ 5.0k
Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening in a clean install
Votes
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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