0
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7
replies
1.9k
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Query
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updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 220
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updated 15.7 years ago by ▴ 260 • written 15.7 years ago by ▴ 250
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9
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3.5k
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problem using Alternative CDF environments, CdfEnvAffy
updated 15.7 years ago by 25k • written 15.7 years ago by ▴ 40
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1
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1.1k
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Specifying a local CDF file for use with fitPLM or others
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updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 40
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1.8k
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updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 120
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15.7 years ago Maxim ▴ 170
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Embedding R output in Word
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 310
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[MAANOVA] Contrasts for interaction levels - possible?
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0
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0
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840
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normalization
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15.7 years ago Yisong Zhen ▴ 200
0
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3
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1.5k
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VSN: minimum number of controls?
Normalization vsn Normalization vsn
updated 15.7 years ago by 25k • written 15.7 years ago by ▴ 20
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Biostrings C interface :: example not compiling
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updated 15.7 years ago by ▴ 290 • written 15.7 years ago by ▴ 210
0
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Using RMA normalization on 3 microarray replicates - valid?
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15.7 years ago James W. MacDonald 68k
0
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0
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Get gene expression data by averaging probes corresponding to the gene?
Microarray probe limma convert Microarray probe limma convert
15.7 years ago Gordon Smyth 53k
0
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0
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'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
15.7 years ago Radek Blatny ▴ 60
0
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1
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813
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Using RMA normalization on 3 microarray replicates - valid?
Normalization Normalization
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 10
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0
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814
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Course***R Advanced Programming April 2010***R Courses*** by XLSolutions Corp Seattle, San Francisco, Salt Lake City
15.7 years ago sue@xlsolutions-corp.com ▴ 570
0
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0
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982
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Time-course microarray tutorial
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15.7 years ago Colin Gillespie ▴ 30
0
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0
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903
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RIP-Chip training
15.7 years ago Eric Blalock ▴ 250
0
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0
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1.2k
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question regarding qc function in simpleaffy package
cdf affy simpleaffy cdf affy simpleaffy
15.7 years ago Groot, Philip de ▴ 630
0
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1
reply
798
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updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 220
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1
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974
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reading cell files
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 220
0
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1
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Get gene expression data by averaging probes corresponding to the gene?
Microarray probe convert Microarray probe convert
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 20
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smlSet
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updated 15.7 years ago by 6.7k • written 15.7 years ago by ▴ 30
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2
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simple functional analysis of gene lists
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updated 15.7 years ago by ▴ 190 • written 15.7 years ago by ▴ 60
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Error in getCdfInfo(object)
cdf simpleaffy cdf simpleaffy
15.7 years ago Arun A K ▴ 20
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4
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4.8k
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GEOquery
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updated 15.7 years ago by 21k • written 15.7 years ago by ★ 4.3k
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stuck with affy/ limma
Clustering affy limma Clustering affy limma
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 170
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removing probes from affybatch error
cdf probe affy cdf probe affy
updated 15.7 years ago by 68k • written 15.7 years ago by ★ 2.0k
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Clustering
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15.7 years ago Chintanu ▴ 310
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Accessing median and IQR values of MAplots
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0
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question regarding qc function in simpleaffy package
cdf affy simpleaffy cdf affy simpleaffy
15.7 years ago James Anderson ▴ 820
0
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0
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1.2k
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Time-course microarray tutorial
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[R] about the possible errors in Rgraphviz Package
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15.7 years ago HU,ZHENGJUN ▴ 20
0
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0
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stuck with affy/limma
Clustering affy limma Clustering affy limma
15.7 years ago Maxim ▴ 170
0
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5
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checking multi-modalities in histograms
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 840
0
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1
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4.9k
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Error in getCdfInfo(object)
cdf cdf
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 20
0
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1
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1.3k
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readMicroRnaAFE function in AgiMicroR package
miRNA Microarray Annotation PROcess miRNA Microarray Annotation PROcess
updated 15.7 years ago by ▴ 360 • written 15.7 years ago by ▴ 360
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filtering in GSEABase package
GO hgu95av2 mouse4302 PROcess Category GO hgu95av2 mouse4302 PROcess Category
updated 15.7 years ago by ▴ 610 • written 15.7 years ago by ▴ 190
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Problem in running expresso command in affy package
Normalization affy Normalization affy
updated 15.7 years ago by ★ 7.4k • written 15.7 years ago by ▴ 20
0
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2.2k
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KEGGgraph: retrieveKGML error (due to wrong ftp path)
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updated 15.7 years ago by ▴ 370 • written 15.7 years ago by ▴ 70
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Fwd: regarding installaion of cdf package
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15.7 years ago Groot, Philip de ▴ 630
0
votes
1
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1.3k
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Problem in running affy package
Normalization affy Normalization affy
updated 15.7 years ago by ▴ 580 • written 15.7 years ago by ▴ 20
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3
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error in gene2pathway results
Organism gene2pathway Organism gene2pathway
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ▴ 420
0
votes
0
replies
1.3k
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Spillover method in flowCore
15.7 years ago Perry_D_Haaland@bd.com ▴ 50
0
votes
1
reply
980
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regarding installaion of cdf package
cdf cdf
15.8 years ago • updated 15.7 years ago sneha patil ▴ 220
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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
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You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
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In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
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