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16.0 years ago Waverley @ Palo Alto ▴ 10
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how to get gene list after hyperGTest (Yue, Chen - BMD)
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16.0 years ago Tarca, Adi ▴ 570
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updated 16.0 years ago by 68k • written 16.0 years ago by ★ 1.9k
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updated 16.0 years ago by ★ 7.2k • written 16.0 years ago by ▴ 40
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how to get gene list after hyperGTest
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updated 16.0 years ago by 68k • written 16.0 years ago by ▴ 60
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16.0 years ago Gordon Smyth 53k
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flowCore: How to Export Median Channel Values from a workFlow
16.0 years ago Aric Gregson ▴ 270
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16.0 years ago qinghua xu ▴ 110
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updated 16.0 years ago by ▴ 170 • written 16.0 years ago by ★ 1.4k
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edgeR: Contrast selection
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updated 16.0 years ago by ★ 6.0k • written 16.0 years ago by ★ 3.8k
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Help on matrix design in Limma - paired samples and two conditions
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16.0 years ago Leonor Palmeira ▴ 100
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updated 16.0 years ago by ▴ 270 • written 16.0 years ago by ★ 1.1k
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LIMMA problems with gpr file (ATF indentifier ?)
limma limma
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Get Gene Information
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ploting paired-end reads using GenomeGraphs
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tukey test
16.0 years ago David ▴ 860
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domainsignatures with non-human KEGG pathways
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phastCon-scores
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updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 50
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16.0 years ago Mark Reimers/FS/VCU ▴ 10
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Heatmaps of K-clusters don't Match Expression
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missing values in limma/contrasts.fit
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转发： 回复： Patent issues of classification algorithms
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Fixing brainarray repository link for mac os x
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46,699 results • Page 687 of 934
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Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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