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0
votes
0
replies
1.1k
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Nomalization using spike-in controls in single channel arrays using limma
Normalization
vsn
Normalization
vsn
16.9 years ago
David
▴ 860
0
votes
0
replies
965
views
lokalisten: dein registrierungs-code
16.9 years ago
register@lokalisten.de
▴ 10
0
votes
1
reply
1.5k
views
Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"
Annotation
biomaRt
Annotation
biomaRt
updated 16.9 years ago by
Nenad Bartonicek
▴ 80 • written 16.9 years ago by
James W. MacDonald
68k
0
votes
2
replies
625
views
txt fille
updated 16.9 years ago by
Steve Lianoglou
★ 13k • written 16.9 years ago by
Joanna Zyprych
▴ 20
0
votes
3
replies
1.3k
views
Curious file size issues
Annotation
Cancer
PROcess
Annotation
Cancer
PROcess
updated 16.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 16.9 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
1.9k
views
heatmap output problems in pdf
Microarray
Microarray
updated 16.9 years ago by
Saroj Mohapatra
▴ 450 • written 16.9 years ago by
Pete Shepard
▴ 240
0
votes
1
reply
810
views
matchPdict error
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
16.9 years ago
Hervé Pagès
16k
0
votes
7
replies
2.6k
views
ANOVA p value calculation
updated 16.9 years ago by
Sean Davis
21k • written 16.9 years ago by
John Antonydas Gaspar
▴ 130
0
votes
2
replies
1.4k
views
Agi4x44PreProcess for miRNA data
miRNA
Agi4x44PreProcess
miRNA
Agi4x44PreProcess
updated 16.9 years ago by
MartenJäger
▴ 40 • written 16.9 years ago by
Pedro Lopez-Romero
▴ 120
0
votes
3
replies
1.4k
views
Biomart Error
Cancer
biomaRt
Cancer
biomaRt
updated 16.9 years ago by
Rhoda Kinsella
▴ 660 • written 16.9 years ago by
Becky Saunders
▴ 40
0
votes
1
reply
1.2k
views
Analysing Illumina v2 and v3 platforms
updated 16.9 years ago by
Pan Du
★ 1.2k • written 16.9 years ago by
Emanuele Marchi
▴ 30
0
votes
1
reply
1.3k
views
Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"
Annotation
Annotation
updated 16.9 years ago by
James W. MacDonald
68k • written 16.9 years ago by
Nenad Bartonicek
▴ 20
0
votes
0
replies
794
views
Introductory BioC Course 27-29 April 09: Analyzing Microarray Experiments
Microarray
Annotation
Preprocessing
Microarray
Annotation
Preprocessing
16.9 years ago
Patrick Aboyoun
★ 1.6k
0
votes
0
replies
891
views
Limma duplicateCorrelation question: how to handle both on-chip and between chip technical replicates?
probe
probe
16.9 years ago
Joseph Fass
▴ 70
0
votes
0
replies
1.2k
views
Announcement: Deadline for new package submission
PROcess
PROcess
16.9 years ago
Nishant Gopalakrishnan
▴ 340
0
votes
0
replies
832
views
Course - March/April ** R / Splus ** course in New York City and San Francisco*** by XLSolutions Corp
16.9 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
5
replies
1.8k
views
Package "xps" import.data error
xps
xps
updated 16.9 years ago by
cstrato
★ 3.9k • written 16.9 years ago by
Wang, Yonghong NIH/NCI
▴ 60
0
votes
0
replies
757
views
Help
16.9 years ago
fei tian
▴ 10
0
votes
7
replies
2.7k
views
ragene10st
Annotation
GO
Rattus norvegicus
ChipName
cdf
probe
affy
AnnotationDbi
AffyCompatible
GO
updated 16.9 years ago by
Groot, Philip de
▴ 630 • written 16.9 years ago by
Sebastien Gerega
▴ 370
0
votes
7
replies
2.6k
views
RG.MA in limma
limma
limma
updated 16.9 years ago by
Naomi Altman
★ 6.0k • written 16.9 years ago by
Wang, Jixin
▴ 90
0
votes
1
reply
888
views
generate heat map from expression ratio using preprocessed data
updated 16.9 years ago by
Sean Davis
21k • written 16.9 years ago by
Pete Shepard
▴ 240
0
votes
0
replies
872
views
Problem memory exonmap
exonmap
exonmap
16.9 years ago
Guido Leoni
▴ 200
0
votes
0
replies
1.2k
views
Bioconductor Digest, Vol 73, Issue 8
Microarray
Annotation
GO
hgu133plus2
probe
biomaRt
flowViz
exonmap
Microarray
Annotation
16.9 years ago
ramesh aathe
▴ 10
0
votes
1
reply
1.2k
views
running exonmap package and chimp arrays
exonmap
exonmap
updated 16.9 years ago by
Michal Okoniewski
▴ 50 • written 16.9 years ago by
Pete Shepard
▴ 240
0
votes
1
reply
797
views
duplicate entries in org.Hs.egCHRLOC?
updated 16.9 years ago by
Sean Davis
21k • written 16.9 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
866
views
reading probe ID file
Microarray
probe
Microarray
probe
16.9 years ago
kuntal worah
▴ 30
0
votes
1
reply
956
views
biomaRt error
biomaRt
biomaRt
updated 16.9 years ago by
Wolfgang Huber
★ 13k • written 16.9 years ago by
Lakshmanan Iyer
▴ 250
0
votes
0
replies
1.2k
views
Research positions available in neuroproteomics
Proteomics
Infrastructure
Proteomics
Infrastructure
16.9 years ago
Abhilash Venu
▴ 340
0
votes
0
replies
1.4k
views
Un site internet pour votre bien immobilier pour bioconductor de stat.math.ethz.ch
16.9 years ago
ymmoo.info
▴ 10
0
votes
1
reply
1.6k
views
Error in HyperGTest with GOHyperGParams class
Annotation
GO
hgu133a2
hgu133plus2
Annotation
GO
hgu133a2
hgu133plus2
updated 16.9 years ago by
Pankaj Chopra
▴ 20 • written 16.9 years ago by
Mayte Suarez-Farinas
▴ 510
0
votes
0
replies
1.9k
views
CMA package: variable selection with limma
Microarray
Classification
Regression
limma
CMA
Microarray
Classification
Regression
limma
16.9 years ago
Renaud Gaujoux
▴ 170
0
votes
0
replies
925
views
How to generate the CDF files for Arabidopsis Tiling Arrays
Microarray
GO
cdf
Microarray
GO
cdf
16.9 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
1.5k
views
Cloud Plotting? flowViz/Core
flowViz
flowViz
updated 16.9 years ago by
Florian Hahne
▴ 540 • written 16.9 years ago by
Aric Gregson
▴ 270
0
votes
4
replies
2.8k
views
Possible to set alternative colnames on read.flowSet (flowCore)
GO
GO
updated 16.9 years ago by
Florian Hahne
▴ 540 • written 16.9 years ago by
Aric Gregson
▴ 270
0
votes
3
replies
2.0k
views
heatmap_2: How to change the legend on the color key?
updated 16.9 years ago by
Saroj Mohapatra
▴ 450 • written 16.9 years ago by
Yen Ngo
▴ 20
0
votes
1
reply
898
views
LIMMA, behaviour of 'lmFit': warnings
probe
limma
probe
limma
updated 16.9 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 16.9 years ago by
Gordon Smyth
53k
0
votes
5
replies
3.8k
views
From eSet to AffyBatch Object
geneplotter
affy
geneplotter
affy
updated 16.9 years ago by
Martin Morgan
25k • written 16.9 years ago by
Boris Umylny
▴ 120
0
votes
0
replies
1.1k
views
Creating annotation packages
miRNA
Annotation
AnnBuilder
AnnotationDbi
miRNA
Annotation
AnnBuilder
AnnotationDbi
16.9 years ago
Gábor Csárdi
▴ 60
0
votes
1
reply
1.2k
views
Three questions about processing Agilent Arrays
limma
Normalization
16.9 years ago • updated 3.8 years ago
Gordon Smyth
53k
0
votes
0
replies
1.5k
views
limma and 3 group design
limma
limma
16.9 years ago
Daren Tan
▴ 120
0
votes
1
reply
1.3k
views
problem with createBeadSummaryData
Normalization
vsn
Normalization
vsn
updated 16.9 years ago by
Mark Dunning
★ 1.1k • written 16.9 years ago by
Groot, Philip de
▴ 630
0
votes
0
replies
820
views
protein function prediction for transcript isoforms
16.9 years ago
shirley zhang
★ 1.0k
0
votes
0
replies
501
views
(no subject)
16.9 years ago
Jack Schultz
▴ 10
0
votes
1
reply
1.2k
views
Agi4x44PreProcess for miRNA data
miRNA
Agi4x44PreProcess
miRNA
Agi4x44PreProcess
updated 16.9 years ago by
Yong Li
▴ 190 • written 16.9 years ago by
MartenJäger
▴ 40
0
votes
3
replies
1.3k
views
discrepancy between BeadStudio images and beadarray imageplot
Microarray
beadarray
Microarray
beadarray
updated 16.9 years ago by
Mark Dunning
★ 1.1k • written 16.9 years ago by
LUIS F MENEZES
▴ 60
0
votes
3
replies
1.7k
views
annotating genes using KEGG
hgu133a
cdf
hgu133a
cdf
16.9 years ago
dhaarini s
▴ 70
0
votes
0
replies
1.3k
views
Assistant/Associate Professor Department of Biostatistics
Pathways
Bayesian
Cancer
charm
Pathways
Bayesian
Cancer
charm
16.9 years ago
Kellie J. Archer, Ph.D.
▴ 120
0
votes
3
replies
1.4k
views
other human genomes, other SNP sets?
Sequencing
BSgenome
SNPlocs
BSgenome
Sequencing
BSgenome
SNPlocs
BSgenome
16.9 years ago
Paul Shannon
★ 1.1k
0
votes
3
replies
1.8k
views
How to generate the CDF files for Arabidopsis Tiling Arrays
cdf
cdf
updated 16.9 years ago by
Wolfgang Huber
★ 13k • written 16.9 years ago by
zhen tao
▴ 30
0
votes
0
replies
874
views
Advanced Course in Analysis of Short Read Sequencing Data
Sequencing
Sequencing
16.9 years ago
Wolfgang Huber
★ 13k
46,721 results • Page
720 of 935
Recent ...
Replies
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results
by
sup0903
• 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt
by
sebastianenewell
• 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data
by
Gordon Smyth
53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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