0
votes
1
reply
927
views
Limma/Time Course Experiments
updated 18.4 years ago by ★ 1.1k • written 18.4 years ago by ★ 1.3k
0
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7
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segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 18.4 years ago by ▴ 250 • written 18.4 years ago by ▴ 440
0
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1
reply
837
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Integrating confidence in HMM
updated 18.4 years ago by ▴ 250 • written 18.4 years ago by ▴ 80
0
votes
2
replies
1.2k
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which package to cluster microarray data?
updated 18.4 years ago by ▴ 160 • written 18.4 years ago by ▴ 70
0
votes
2
replies
1.3k
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RMA of CEL files from different chip types
hgu133a hgu133plus2 hgu133a hgu133plus2
updated 18.4 years ago by ▴ 190 • written 18.4 years ago by ▴ 10
0
votes
5
replies
1.6k
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Stuck with Yeast Tiling Array
tilingArray tilingArray
updated 18.4 years ago by ▴ 730 • written 18.4 years ago by ▴ 70
0
votes
1
reply
896
views
Unexpected lumiR error message
updated 18.4 years ago by ▴ 830 • written 18.4 years ago by ▴ 20
0
votes
1
reply
1.2k
views
chromosome arms missing from Affy's Mapping 500K Array Set SNP chips?
SNP affy SNP affy
updated 18.4 years ago by ▴ 40 • written 18.4 years ago by ▴ 290
0
votes
0
replies
1.2k
views
homologs for xenopus laevis
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18.4 years ago Mayte Suarez-Farinas ▴ 510
0
votes
0
replies
673
views
topTable in limma
18.4 years ago Brooke LaFlamme ▴ 30
0
votes
0
replies
1.1k
views
limma questions (normalization)
Microarray Normalization limma Microarray Normalization limma
18.4 years ago Brooke LaFlamme ▴ 30
0
votes
0
replies
1.2k
views
Microarray Workshop in Tucson, January 2008
Microarray probe Microarray probe
18.4 years ago David Henderson ▴ 100
0
votes
5
replies
2.3k
views
Extremely low p-values in limma
limma a4 limma a4
updated 18.4 years ago by ★ 6.0k • written 18.4 years ago by ▴ 110
0
votes
3
replies
918
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assign a same probe to differents probesets
updated 18.4 years ago by ▴ 950 • written 18.4 years ago by ▴ 20
0
votes
5
replies
1.4k
views
Problem with getSnpAnnotation (2)
updated 18.4 years ago by ▴ 250 • written 18.4 years ago by ▴ 80
0
votes
2
replies
1.1k
views
Problem with "as.matrix.vsn" and "duplicateCorrelation" fromlimma
vsn vsn
updated 18.4 years ago by ★ 13k • written 18.4 years ago by 53k
0
votes
1
reply
653
views
Problem with "as.matrix.vsn" and "duplicateCorrelation" from limma
updated 18.4 years ago by ★ 13k • written 18.4 years ago by ▴ 340
0
votes
1
reply
1.1k
views
GCRMA works for my updated cdf and probesequence files.
cdf probe gcrma cdf probe gcrma
updated 18.4 years ago by ▴ 450 • written 18.4 years ago by ▴ 130
0
votes
2
replies
2.0k
views
Question on limma single-channel analysis of dual-channel microarray
updated 18.4 years ago by ★ 6.0k • written 18.4 years ago by ▴ 50
0
votes
2
replies
1.4k
views
KEGG pathway
Pathways Pathways
updated 18.4 years ago by ★ 7.2k • written 18.4 years ago by ▴ 130
0
votes
0
replies
652
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packages recommendation
Microarray limma Microarray limma
18.4 years ago Tiandao Li ▴ 260
0
votes
0
replies
1.2k
views
R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
18.4 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
338
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plot with CI
18.4 years ago carol white ▴ 680
0
votes
1
reply
935
views
help for canine 2.0 arrays
cdf affy cdf affy
updated 18.4 years ago by 68k • written 18.4 years ago by ▴ 10
0
votes
1
reply
1.0k
views
SAM vs. sam2.20
updated 18.4 years ago by ▴ 900 • written 18.4 years ago by ▴ 260
0
votes
10
replies
2.4k
views
Problem with invalid GO term in HyperGResult object - NOT solved
GO Cancer GOstats affycoretools GO Cancer GOstats affycoretools
updated 18.4 years ago by ★ 2.2k • written 18.4 years ago by ★ 7.4k
0
votes
1
reply
993
views
graph package: how to combine two graphs to create a third?
graph graph
updated 18.4 years ago by ▴ 510 • written 18.4 years ago by ★ 1.1k
0
votes
0
replies
1.4k
views
gcrma problem caused by using updated new CDF and probesequence?
Normalization hgu133a hgu95a cdf probe affy gcrma PROMISE Normalization hgu133a hgu95a
18.4 years ago Yan Zhang ▴ 130
0
votes
0
replies
1.3k
views
problem with function to interrogate x:Map (exonmap)
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18.4 years ago Wolfgang Raffelsberger ▴ 160
0
votes
4
replies
1.6k
views
create CNA object in DNAcopy package with agilent data
CGH CGH
updated 18.4 years ago by 21k • written 18.4 years ago by ▴ 230
0
votes
3
replies
929
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Having two parallel versions of BioC
updated 18.4 years ago by ▴ 700 • written 18.4 years ago by ▴ 200
0
votes
2
replies
855
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about label permutation test for binary classification
updated 18.4 years ago by ▴ 730 • written 18.4 years ago by ▴ 820
0
votes
0
replies
492
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Rank-product and dye-swap effects
18.4 years ago Vinuela, Ana ▴ 30
0
votes
1
reply
1.1k
views
beadarray bead-level normalisation for single channel data
beadarray beadarray
updated 18.4 years ago by ▴ 550 • written 18.4 years ago by ▴ 70
0
votes
0
replies
614
views
Help with mix array
18.4 years ago Jason Pear ▴ 90
0
votes
1
reply
1.2k
views
Between array normalization for biological replicates
Microarray Normalization Cancer limma Microarray Normalization Cancer limma
updated 18.4 years ago by ★ 13k • written 18.4 years ago by ▴ 90
0
votes
2
replies
727
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trouble with installing Biobase package
18.4 years ago Tena Sakai ▴ 40
0
votes
2
replies
940
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subset MarrayList
limma limma
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 30
0
votes
3
replies
1.1k
views
GOstat with replicates
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ★ 6.0k
0
votes
3
replies
1.9k
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timecourse + factorial + replicates in LIMMA
TimeCourse timecourse TimeCourse timecourse
updated 18.4 years ago by ★ 6.0k • written 18.4 years ago by ▴ 70
0
votes
11
replies
2.1k
views
error in matchprobes package
updated 18.4 years ago by 68k • written 18.4 years ago by ▴ 130
0
votes
1
reply
1.8k
views
deleting probes in expression set
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 40
0
votes
0
replies
1.3k
views
biomaRt -> XML::addNode masks graph
SystemsBiology Cancer graph biomaRt SystemsBiology Cancer graph biomaRt
18.4 years ago Seth Falcon ★ 7.4k
0
votes
7
replies
2.0k
views
slow insertions in to graphNEL object (24 hours for 16k nodes)
graph graph
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ★ 1.1k
0
votes
0
replies
1.3k
views
Problem when comparing a large experimental group versus a small control group by using SAM
Bayesian Bayesian
18.4 years ago Naomi Altman ★ 6.0k
0
votes
0
replies
711
views
Question about how the lmFit function in Limma uses spot weights
limma limma
18.4 years ago Jeremy Darot ▴ 10
0
votes
5
replies
1.8k
views
different gal files using limma
Microarray Normalization limma Microarray Normalization limma
updated 18.4 years ago by ▴ 260 • written 18.4 years ago by 53k
0
votes
1
reply
1.1k
views
error in makecdfenv
makecdfenv makecdfenv
updated 18.4 years ago by 68k • written 18.4 years ago by ▴ 130
0
votes
2
replies
1.2k
views
affTableAnn error
hgu133a2 moe430a mouse430a2 cdf limma matchprobes hgu133a2 moe430a mouse430a2 cdf limma
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ★ 2.0k
0
votes
2
replies
856
views
filtering on external genelist
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 30
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