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3 years, 6 months ago
United States
BiocStyle::html_document does not render Glimma plots
3 years, 6 months ago
India
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
3 years, 6 months ago
India
Unable to convert Uniprot ID to Gene IDs using Biomart
3 years, 6 months ago
Belgium
Introduction to genomic data analysis with R and Bioconductor in Heidelberg, 12-13 September 2022
3 years, 6 months ago
United States
calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMetrics
3 years, 6 months ago
Malaysia
Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (0,2 and 4h) with 3 group (1 control, 2 treated)
3 years, 6 months ago
United Kingdom
Confused about the CPM and TMM normalization in edgeR
3 years, 6 months ago
United States
package 'BiocInstaller' is not available (for R version 3.4.4)
3 years, 6 months ago
United States
batchelor correctExperiments() returns Error in eval(subscript, envir = eframe, enclos = eframe) : '...' used in an incorrect context
3 years, 6 months ago
India
Using Age or other numerical variable to model expression in deseq2
3 years, 6 months ago
Chile
How fix lines of dendrogram that overlap in the column portion of a heatmap?
3 years, 6 months ago
France
set.seed in function vs clusterSetRNGStream: switching from one to another
3 years, 6 months ago
United States
Use of Scater for QC in scRNA-seq: How to remove cells with less than certain number of genes supported with certain number of reads
3 years, 7 months ago
United Kingdom
Confused about using RUVg in getting negative control genes using RUVg
3 years, 7 months ago
United States
DESeq2: relevel() unsuccessfully setting control group
3 years, 7 months ago
United States
Help with limma contrast, difference of a difference?
3 years, 7 months ago
United States
DiffBind bUseSummarizeOverlaps error - the rownames and colnames of the supplied assay(s) must be NULL or identical to those of the SummarizedExperiment object
3 years, 7 months ago
United States
Different DESeq2 results (both FC and pvalue) by changing col/row orders in input
3 years, 7 months ago
United States
Problem in kegga() and others getting data from KEGG after switch from http to https
3 years, 7 months ago
Singapore
RUVseq, DESeq2, and different codesets for nanostring data
3 years, 7 months ago
Chile
What to do when all the installation methods for a package fail (pagoo)?
3 years, 7 months ago
Zheng Zhou
How to compute P/A calls at gene-level probeset of Human Gene 1.0 ST Array
3 years, 7 months ago
Norway
How do I remove the outlier probes highlighted in the plotSA function of limma
3 years, 7 months ago
Canada
Diffbind: different results on the same sample depending on contrast parameters
3 years, 7 months ago
Norway
Thoughts on how to model gene expression data from two groups in a clinical trial
3 years, 7 months ago
United States
biomaRt useMart Error in textConnection(BioMartVersion) : invalid 'text' argument
3 years, 7 months ago
Switzerland
removeBatchEffect: Coefficients not estimable when using "batch matrix" for `covariates` argument.
3 years, 8 months ago
India
Can Differential Isoform expression analysis can be performed using DESeq2 package
3 years, 8 months ago
United Kingdom
Confused about the design matrix in edgeR: How to tell R to consider one level as a reference and the other is a treatment to be compared to that ref.
3 years, 8 months ago
United States
Subsetting operation on CompressedGRangesList object 'x' produces a result that is too big to be represented as a CompressedList object.
3 years, 8 months ago
Japan
Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI()
3 years, 8 months ago
European Union
layout has more positions than samples but omixerRand doesn't randomize the samples
3 years, 8 months ago
United Kingdom
regression analysis for epic array methylation data using limma
3 years, 8 months ago
University of Eastern Finland
Calculation of module membership in WGCNA
3 years, 8 months ago
United States
Question on RNA-Seq single sample data analysis in EdgeR
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