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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
11 minutes ago
BioinfGuru
▴ 30
0
votes
0
replies
13
views
Can I trust the differential expression analysis when the two groups overlap on the PCA?
DESeq2
pcaExplorer
2 hours ago
Eric Katagirya
• 0
0
votes
0
replies
16
views
normalization across different species for DESeq2 analysis
DESeq2
normalization
Normalization
acrossspecies
5 hours ago
piemmea
• 0
0
votes
1
reply
27
views
Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
updated 6 hours ago by
Guido Hooiveld
★ 3.9k • written 6 hours ago by
Yveto
• 0
0
votes
0
replies
17
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DEXSeq design formula for multiple variable
DEXSeq
6 hours ago
Sara
• 0
0
votes
1
reply
64
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
updated 12 hours ago by
Guido Hooiveld
★ 3.9k • written 1 day ago by
aogunbaw
• 0
0
votes
1
reply
51
views
ChAMP installation issue
Cha
ChAMP
updated 10 hours ago by
shepherl
3.9k • written 17 hours ago by
e1271094
• 0
0
votes
0
replies
23
views
Anti-Human APCS Recombinant Antibody (Dezamizumab)
healthyFlowData
17 hours ago
Lupe
• 0
0
votes
1
reply
105
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
1 day ago • updated 1 hour ago
Matthew Thornton
▴ 350
2
votes
2
replies
239
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
6 days ago • updated 13 hours ago
zzrammal
• 0
0
votes
42
replies
3.0k
views
How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges
nullranges
updated 6 hours ago by
Michael Love
42k • written 15 months ago by
Poonam
• 0
2
votes
3
replies
1.7k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 3 hours ago by
bandconductor
• 0 • written 3.6 years ago by
ZheFrench
▴ 60
12 results • Page
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Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
alex.pico
▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
by
bandconductor
• 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Votes
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
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