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Bioconductor 3.19 is Released!
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3 days ago
shepherl
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List of Deprecated Packages for Bioc3.18
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10 months ago • updated 17 days ago
shepherl
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[Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv
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Leonardo Collado Torres
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Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
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23 days ago
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News:
List of Deprecated Packages for Bioc3.19
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9 weeks ago • updated 11 days ago
shepherl
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BioC2024 deadlines approaching
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4 days ago
Maria Doyle
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Interested in the analysis of Spatial Omics data?
tidySpatialExperiment
SpatialExperiment
MoleculeExperiment
11 days ago
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Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
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26 days ago
Wolfgang Huber
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News:
European Bioconductor Conference 2023 planning
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updated 13 days ago by
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• 0 • written 18 months ago by
Maria Doyle
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News:
Important Release 3.18 Freeze Announcment
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22 days ago
shepherl
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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