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Bioconductor Conference

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maintainer policy Bioconductor Devel devel

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GSEABenchmarkeR pairedGSEA GeneSetEnrichment

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Bioconductor

written 8 months ago by Wei Shi ★ 3.6k

6 results • Page 1 of 1

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Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within by Pat • 0

Ill be honest, I didnt trust any of these services for a long time. Im a political science major and the pressure around writing is intense…

Comment: Question on processing compound protein groups in limpa by brianpeterson1210 • 0

Thank you[,][1] Appreciated! [1]: http://paint3d.org

Comment: Subsetting DDS object for individual conditions over time by A ▴ 60

Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…

Answer: Subsetting DDS object for individual conditions over time by ATpoint ★ 5.0k

It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…

Comment: GSEA error by Adithi • 0

Thank you so much. That makes perfect sense to me. I will work on this.

Votes

Comment: Question about using LRT test for time course experiments with DESeq2

A: DESeq2 LRT test for multi-factor designs

Answer: RNA Seq using Lrt

Answer: DESeq2 LRT Reduced Formula

Answer: DESeq2: LRT or WALD guidance

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Teacher to ATpoint ★ 5.0k

Teacher to Michael Love 43k