Bioconductor 10X

Showing : 10X • reset

votes

replies

1.1k

views

scrn 10x scRNAseq emptyDrops DropletUtils

5 months ago Peter Hickey ▴ 760

vote

1.7k

views

labels PBMC SingleCellMultiModal 10X

updated 9 months ago by ATpoint ★ 5.0k • written 9 months ago by javier.ruizramirez • 0

votes

replies

1.2k

views

CellRanger emptyDrops scRNAseq 10X

22 months ago rocanja ▴ 60

votes

1.6k

views

SingleCell emptyDrops 10X

updated 2.7 years ago by Peter Hickey ▴ 760 • written 2.7 years ago by sandra.garces.19 • 0

votes

replies

1.3k

views

RNAseq 10X

2.8 years ago wt215 • 0

votes

replies

4.8k

views

DropletUtils emptyDrops scRNA scRNAseq 10x

3.5 years ago • updated 3.4 years ago Peter Hickey ▴ 760

vote

1.7k

views

DropletUtils emptyDrops 10x

updated 5.0 years ago by Aaron Lun ★ 29k • written 5.0 years ago by Peter Hickey ▴ 760

votes

replies

2.3k

views

deseq2 zinbwave 10X scRNA-seq Differential expression

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by vincent.croset ▴ 20

votes

replies

3.9k

views

10x scrna-seq

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by jma1991 ▴ 70

votes

replies

10k

views

single-cell 10X Cell calling DropletUtils cellranger

updated 6.9 years ago by Aaron Lun ★ 29k • written 6.9 years ago by xingxd16 ▴ 20

10 results • Page 1 of 1

Recent ...

Replies

Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k

Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …

Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

Awards • All