Bioconductor 10X

Showing : 10X • reset

votes

replies

709

views

scrn 10x scRNAseq emptyDrops DropletUtils

26 days ago • updated 17 days ago Peter Hickey ▴ 760

vote

1.6k

views

labels PBMC SingleCellMultiModal 10X

updated 4 months ago by ATpoint ★ 4.9k • written 4 months ago by javier.ruizramirez • 0

votes

replies

932

views

CellRanger emptyDrops scRNAseq 10X

17 months ago rocanja ▴ 60

votes

1.4k

views

SingleCell emptyDrops 10X

updated 2.3 years ago by Peter Hickey ▴ 760 • written 2.3 years ago by sandra.garces.19 • 0

votes

replies

1.1k

views

RNAseq 10X

2.4 years ago wt215 • 0

votes

replies

4.0k

views

DropletUtils emptyDrops scRNA scRNAseq 10x

3.1 years ago • updated 3.0 years ago Peter Hickey ▴ 760

vote

1.4k

views

DropletUtils emptyDrops 10x

updated 4.6 years ago by Aaron Lun ★ 29k • written 4.6 years ago by Peter Hickey ▴ 760

votes

replies

2.1k

views

deseq2 zinbwave 10X scRNA-seq Differential expression

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by vincent.croset ▴ 20

votes

replies

3.6k

views

10x scrna-seq

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by jma1991 ▴ 70

votes

replies

9.1k

views

single-cell 10X Cell calling DropletUtils cellranger

updated 6.5 years ago by Aaron Lun ★ 29k • written 6.5 years ago by xingxd16 ▴ 20

10 results • Page 1 of 1

Recent ...

Replies

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

Awards • All

Popular Question to Robert Castelo ★ 3.4k