Bioconductor 10X

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scrn 10x scRNAseq emptyDrops DropletUtils

6 months ago • updated 5 months ago Peter Hickey ▴ 760

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1.7k

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labels PBMC SingleCellMultiModal 10X

updated 10 months ago by ATpoint ★ 5.0k • written 10 months ago by javier.ruizramirez • 0

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CellRanger emptyDrops scRNAseq 10X

22 months ago rocanja ▴ 60

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1.6k

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SingleCell emptyDrops 10X

updated 2.7 years ago by Peter Hickey ▴ 760 • written 2.8 years ago by sandra.garces.19 • 0

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RNAseq 10X

2.9 years ago wt215 • 0

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4.9k

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DropletUtils emptyDrops scRNA scRNAseq 10x

3.5 years ago Peter Hickey ▴ 760

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1.7k

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DropletUtils emptyDrops 10x

updated 5.0 years ago by Aaron Lun ★ 29k • written 5.0 years ago by Peter Hickey ▴ 760

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2.3k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by vincent.croset ▴ 20

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4.0k

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10x scrna-seq

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by jma1991 ▴ 70

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10k

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single-cell 10X Cell calling DropletUtils cellranger

updated 6.9 years ago by Aaron Lun ★ 29k • written 6.9 years ago by xingxd16 ▴ 20

10 results • Page 1 of 1

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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Votes

Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

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Teacher to Michael Love 43k

Supporter to fl ▴ 20

Popular Question to James W. MacDonald 68k