Bioconductor 10X

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628

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CellRanger emptyDrops scRNAseq 10X

9 months ago rocanja ▴ 60

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979

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SingleCell emptyDrops 10X

updated 19 months ago by Peter Hickey ▴ 740 • written 19 months ago by sandra.garces.19 • 0

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923

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RNAseq 10X

21 months ago wt215 • 0

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3.2k

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.4 years ago • updated 2.3 years ago Peter Hickey ▴ 740

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1.2k

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DropletUtils emptyDrops 10x

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by Peter Hickey ▴ 740

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1.6k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by vincent.croset ▴ 20

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3.0k

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10x scrna-seq

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by jma1991 ▴ 70

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7.9k

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single-cell 10X Cell calling DropletUtils cellranger

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by xingxd16 ▴ 20

8 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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