Bioconductor 10X

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578

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CellRanger emptyDrops scRNAseq 10X

8 months ago rocanja ▴ 60

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941

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SingleCell emptyDrops 10X

updated 18 months ago by Peter Hickey ▴ 740 • written 18 months ago by sandra.garces.19 • 0

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899

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RNAseq 10X

20 months ago wt215 • 0

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3.1k

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.3 years ago Peter Hickey ▴ 740

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1.2k

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DropletUtils emptyDrops 10x

updated 3.8 years ago by Aaron Lun ★ 28k • written 3.8 years ago by Peter Hickey ▴ 740

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1.6k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.4 years ago by Michael Love 42k • written 4.4 years ago by vincent.croset ▴ 20

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2.9k

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10x scrna-seq

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by jma1991 ▴ 70

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7.8k

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single-cell 10X Cell calling DropletUtils cellranger

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by xingxd16 ▴ 20

8 results • Page 1 of 1

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Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Answer: Identical samples after deseq2 batch effect removal by Michael Love 42k

> 2 of my treatment samples have identical normalised gene expression for all genes. This sounds like a quantification / sample labeling…

Answer: Downloading Metagenomic Data with Higher Taxonomic Units by Levi Waldron ★ 1.1k

I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…

Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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