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CellRanger emptyDrops scRNAseq 10X

12 months ago rocanja ▴ 60

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SingleCell emptyDrops 10X

updated 22 months ago by Peter Hickey ▴ 750 • written 22 months ago by sandra.garces.19 • 0

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994

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RNAseq 10X

2.0 years ago • updated 24 months ago wt215 • 0

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.6 years ago Peter Hickey ▴ 750

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DropletUtils emptyDrops 10x

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by Peter Hickey ▴ 750

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by vincent.croset ▴ 20

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10x scrna-seq

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by jma1991 ▴ 70

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single-cell 10X Cell calling DropletUtils cellranger

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by xingxd16 ▴ 20

8 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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Popular Question to Dario Strbenac ★ 1.6k