Bioconductor 10X

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531

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CellRanger emptyDrops scRNAseq 10X

7 months ago rocanja ▴ 60

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909

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SingleCell emptyDrops 10X

updated 17 months ago by Peter Hickey ▴ 740 • written 18 months ago by sandra.garces.19 • 0

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875

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RNAseq 10X

19 months ago wt215 • 0

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3.0k

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.2 years ago Peter Hickey ▴ 740

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1.2k

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DropletUtils emptyDrops 10x

updated 3.8 years ago by Aaron Lun ★ 28k • written 3.8 years ago by Peter Hickey ▴ 740

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1.6k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.3 years ago by Michael Love 42k • written 4.3 years ago by vincent.croset ▴ 20

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2.8k

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10x scrna-seq

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by jma1991 ▴ 70

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7.7k

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single-cell 10X Cell calling DropletUtils cellranger

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by xingxd16 ▴ 20

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Comment: limma technical repeat correction by john • 0

@gordonsmyth Thank you for getting back to me and apologies for the confusion - `replicates_1` column indicates for a patient (cell line)…

Comment: Question about using LRT test for time course experiments with DESeq2 by Michael Love 42k

I understood your question above (at least I think so) and my response above remains relevant. > How can I get a coefficient/genes for th…

Answer: probe ID search for SNP (plink) by James W. MacDonald 67k

This site is meant to help people with questions about Bioconductor packages. Plink is not a Bioconductor package, or even an R package. Yo…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Benjamin • 0

Thanks Mike, I will post here again when this issue gets resolved.

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Mike Smith ★ 6.5k

You are not the only biomaRt user to encounter this, and I contacted the Ensembl helpdesk. I got the reply below, which hopefully means it…

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Answer: biomaRt rnorvegicus_gene_ensembl not available anymore

Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

Answer: Why `FoldEnrichment`,`RichFactor`and `zScore` are not in the ReactomePA::enrichP

Comment: Why `FoldEnrichment`,`RichFactor`and `zScore` are not in the ReactomePA::enrichP

Answer: Analysis of 2*4 factorial design

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