Bioconductor Adjusted pvalue

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1.4k

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pvalue adjusted pvalue fdrtool

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by hele7 ▴ 20

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1.0k

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deseq2 differential expression adjusted pvalue

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by A ▴ 40

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6.1k

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limma voom adjusted pvalue

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by b.nota ▴ 370

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801

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deseq2 adjusted pvalue

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by lirongrossmann ▴ 80

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1.7k

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deseq2 adjusted pvalue

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by hs.lansdell ▴ 20

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1.5k

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edger adjusted pvalue

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by Nik McPherson • 0

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1.8k

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deseq2 adjusted pvalue

updated 7.9 years ago by Michael Love 42k • written 7.9 years ago by pkachroo ▴ 10

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10k

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pvalue adjusted pvalue r bonferroni rna-seq

updated 8.1 years ago by Michael Love 42k • written 8.1 years ago by fromhj304 ▴ 10

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1.6k

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cummeRbund pvalue adjusted pvalue qvalue

updated 8.8 years ago by James W. MacDonald 67k • written 8.8 years ago by Sameet Mehta ▴ 30

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1.4k

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multtest methylation adjusted pvalue

updated 9.0 years ago by kpollard ▴ 110 • written 9.0 years ago by elhananby ▴ 10

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10k

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deseq2 adjusted pvalue

updated 9.5 years ago by Steve Lianoglou ★ 13k • written 9.5 years ago by Assa Yeroslaviz ★ 1.5k

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3.9k

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DESeq2 LogFC Adjusted pvalue

updated 9.8 years ago by Michael Love 42k • written 9.8 years ago by madal • 0

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Answer: Is it possible to parallelise saveHDF5SummarizedExperiment by Hervé Pagès 16k

Hi Stefano, Unfortunately HDF5 doesn't support concurrent writing so parallelising is not an option. A few things that maybe could help: …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

It's a simple two-liner in [getsrc.sh][1] ``` awk -F'\t' 'BEGIN {OFS=FS} {if($3 != $11 && $11 != "-") $3 = $11; print $0}' gene_info > tmp…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Thanks for changing this! Just to confirm I understood it correctly: the `Symbol` will (still) be used, and will be replaced by `Symbol fro…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

OK, there are 157 MT genes in maybe 6 species for which the symbols are not correct, and I added code to swap the 'Symbol from nomenclature…

Comment: Tximport with RSEM error by Michael Love 42k

Would you post a new issue with example code and maybe what the files look like?

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Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

A: GOseq analysis with only upregulated or downregulated genes

Answer: Properly constructing a hypergeometric test

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