Bioconductor Adjusted pvalue

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1.4k

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pvalue adjusted pvalue fdrtool

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by hele7 ▴ 20

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1.0k

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deseq2 differential expression adjusted pvalue

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by A ▴ 40

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6.2k

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limma voom adjusted pvalue

updated 6.9 years ago by Gordon Smyth 51k • written 6.9 years ago by b.nota ▴ 370

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806

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deseq2 adjusted pvalue

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by lirongrossmann ▴ 80

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1.7k

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deseq2 adjusted pvalue

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by hs.lansdell ▴ 20

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1.5k

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edger adjusted pvalue

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by Nik McPherson • 0

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1.8k

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deseq2 adjusted pvalue

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by pkachroo ▴ 10

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11k

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pvalue adjusted pvalue r bonferroni rna-seq

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by fromhj304 ▴ 10

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1.6k

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cummeRbund pvalue adjusted pvalue qvalue

updated 8.9 years ago by James W. MacDonald 67k • written 8.9 years ago by Sameet Mehta ▴ 30

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1.4k

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multtest methylation adjusted pvalue

updated 9.0 years ago by kpollard ▴ 110 • written 9.0 years ago by elhananby ▴ 10

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10k

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deseq2 adjusted pvalue

updated 9.5 years ago by Steve Lianoglou ★ 13k • written 9.5 years ago by Assa Yeroslaviz ★ 1.5k

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4.0k

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DESeq2 LogFC Adjusted pvalue

updated 9.9 years ago by Michael Love 43k • written 9.9 years ago by madal • 0

12 results • Page 1 of 1

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Comment: Struggle with the replicates of epic array data by Melisa Tecik • 0

Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …

Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

Votes

Answer: Struggle with the replicates of epic array data

Answer: bioconductor packages on bioconda

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Awards • All

Scholar to James W. MacDonald 67k