Showing : Agi4x44PreProcess • reset
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How to do three-color agilent microarray analysis
microarray limma normalization agi4x44preprocess
updated 10.9 years ago by 53k • written 10.9 years ago by • 0
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9
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Agi4x44PreProcess for Bioconductor version 3.0
Agi4x44PreProcess
11.0 years ago dimitri.leonid.lindenwald ▴ 50
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Agi4x44Preprocess - error on read.AgilentFE fucntion
limma Agi4x44PreProcess limma Agi4x44PreProcess
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
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comparing qpcr and chip
Agi4x44PreProcess HTqPCR Agi4x44PreProcess HTqPCR
13.4 years ago marco fabbri ▴ 320
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Error: Re: Annotation Database for Agilent 8x60K Human Gene Expression Arrays
Annotation probe affy AnnotationDbi Agi4x44PreProcess Annotation probe affy AnnotationDbi
updated 13.4 years ago by ★ 7.2k • written 13.4 years ago by ▴ 200
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Annotation Database for Agilent 8x60K Human Gene Expression Arrays
Microarray Annotation Agi4x44PreProcess Microarray Annotation Agi4x44PreProcess
updated 13.5 years ago by ★ 7.2k • written 13.5 years ago by ▴ 200
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Problem with BGandNorm() from the Agi4x44PreProcess package
vsn Agi4x44PreProcess vsn Agi4x44PreProcess
13.6 years ago marco fabbri ▴ 320
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Trouble using Agi4x44tPreProcess to anaylise old files
miRNA limma Agi4x44PreProcess miRNA limma Agi4x44PreProcess
13.6 years ago matthew vitalone ▴ 30
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Agi4x44Preprocess/Limma and number of significant p-values
Microarray Annotation limma Agi4x44PreProcess Microarray Annotation limma Agi4x44PreProcess
updated 14.1 years ago by ▴ 30 • written 14.1 years ago by ▴ 200
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1.3k
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Agi4x44Preprocess/Limma and number of significant p-values
Microarray Annotation limma Agi4x44PreProcess Microarray Annotation limma Agi4x44PreProcess
updated 14.1 years ago by ▴ 110 • written 14.1 years ago by ▴ 200
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best annotation package for drosophila (agilent gene expression)?
Annotation Agi4x44PreProcess Annotation Agi4x44PreProcess
14.1 years ago Jarek Bryk ▴ 110
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4
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Agi4x44PreProcess package: Error in build.est
Agi4x44PreProcess Agi4x44PreProcess
updated 14.2 years ago by ▴ 80 • written 14.2 years ago by ▴ 20
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FW: normalization one color microarrays
Normalization hgug4112a PROcess Agi4x44PreProcess Normalization hgug4112a PROcess
14.3 years ago Paz Tapia Ramirez ▴ 150
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2.3k
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Error in` [. Data.frame `(obj, , columns [[a]]): undefined columns selected"
Agi4x44PreProcess Agi4x44PreProcess
updated 14.3 years ago by ▴ 40 • written 14.3 years ago by ▴ 150
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1.6k
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Agi4x44PreProcess /filtering probenames from GeneName
Annotation probe Agi4x44PreProcess Annotation probe Agi4x44PreProcess
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 10
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annotation for Mouse GE 8x60K
Annotation Agi4x44PreProcess Annotation Agi4x44PreProcess
14.9 years ago marco fabbri ▴ 320
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1.0k
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Agi4x44PreProcess - Replicated Genes Error
Annotation probe Agi4x44PreProcess Annotation probe Agi4x44PreProcess
updated 15.4 years ago by ▴ 120 • written 15.4 years ago by ▴ 40
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Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a Agi4x44PreProcess hgug4112a Agi4x44PreProcess
updated 15.4 years ago by ▴ 460 • written 15.4 years ago by ▴ 20
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filtering individual flagged values in Agi4x44PreProcess
Annotation probe Agi4x44PreProcess Annotation probe Agi4x44PreProcess
15.4 years ago Leslie M. Turner ▴ 10
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1.4k
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Annotation in Agi4x44PreProcess
Annotation zebrafish probe Agi4x44PreProcess Annotation zebrafish probe Agi4x44PreProcess
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ▴ 40
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Agi4x44PreProcess Problem
Agi4x44PreProcess Agi4x44PreProcess
updated 15.6 years ago by ▴ 10 • written 15.6 years ago by ▴ 10
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3
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1.6k
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within array normalization for one color agilent array.??
Normalization Agi4x44PreProcess Normalization Agi4x44PreProcess
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 100
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Agi4x44PreProcess - Filtering Probe Function
Annotation Agi4x44PreProcess Annotation Agi4x44PreProcess
15.8 years ago Yong Li ▴ 190
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Agi4x44PreProcess - Filtering Probe Function
Annotation Agi4x44PreProcess Annotation Agi4x44PreProcess
15.8 years ago BJORN GILL ▴ 10
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Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a probe limma Agi4x44PreProcess hgug4112a probe limma Agi4x44PreProcess
16.0 years ago Pedro Lopez-Romero ▴ 120
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Agi4x44PreProcess
convert GEOquery Agi4x44PreProcess convert GEOquery Agi4x44PreProcess
updated 16.0 years ago by ▴ 460 • written 16.0 years ago by ★ 1.3k
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3
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1.6k
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Agilent Array Analysis Question
affy limma Agi4x44PreProcess AgiMicroRna affy limma Agi4x44PreProcess AgiMicroRna
updated 16.0 years ago by ★ 1.3k • written 16.0 years ago by ▴ 350
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Agi4x44PreProcess - Replicated genes
Annotation GUI probe Agi4x44PreProcess Annotation GUI probe Agi4x44PreProcess
updated 16.1 years ago by ★ 1.3k • written 16.1 years ago by ▴ 460
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3
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agi4x44preprocess
Agi4x44PreProcess Agi4x44PreProcess
updated 16.1 years ago by ▴ 430 • written 16.1 years ago by ▴ 460
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build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
16.4 years ago Massimo Pinto ▴ 390
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Agi4x44PreProcess probe summarization bug?
Agi4x44PreProcess Agi4x44PreProcess
16.4 years ago Tobias Straub ▴ 430
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2
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1.2k
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limma and matrix design for single channel arrays - in search of a primer.
Microarray limma Agi4x44PreProcess Microarray limma Agi4x44PreProcess
updated 16.5 years ago by 68k • written 16.5 years ago by ▴ 390
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896
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problem with reading agilent microarray data into agi4x44preprocess
mgug4122a Agi4x44PreProcess mgug4122a Agi4x44PreProcess
16.6 years ago Jarek Bryk ▴ 110
0
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3
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1.5k
views
read.targets() in the Agi4x44PreProcess package
Agi4x44PreProcess Agi4x44PreProcess
updated 16.6 years ago by ▴ 120 • written 16.6 years ago by ▴ 390
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2
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1.3k
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Problem loading data for Agi4x44PreProcess
Cancer Agi4x44PreProcess Cancer Agi4x44PreProcess
16.6 years ago Bernal-Mizrachi, Leon ▴ 50
0
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3
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1.5k
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Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList (re-posted, due to earlier post failure)
Agi4x44PreProcess Agi4x44PreProcess
updated 16.6 years ago by ▴ 120 • written 16.6 years ago by ▴ 390
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0
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836
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Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList.
Agi4x44PreProcess Agi4x44PreProcess
16.6 years ago Massimo Pinto ▴ 390
0
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2
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1.4k
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Agi4x44PreProcess for miRNA data
miRNA Agi4x44PreProcess miRNA Agi4x44PreProcess
updated 16.7 years ago by ▴ 40 • written 16.7 years ago by ▴ 120
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1
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1.2k
views
Agi4x44PreProcess for miRNA data
miRNA Agi4x44PreProcess miRNA Agi4x44PreProcess
updated 16.8 years ago by ▴ 190 • written 16.8 years ago by ▴ 40
0
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0
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1.2k
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Queries on the 4x44PreProcess Package
Normalization ctc limma Agi4x44PreProcess Normalization ctc limma Agi4x44PreProcess
16.8 years ago Pedro López Romero ▴ 360
40 results • Page 1 of 1
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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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