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Agi4x44PreProcess
•
reset
5
votes
9
replies
2.0k
views
Agi4x44PreProcess for Bioconductor version 3.0
Agi4x44PreProcess
9.4 years ago
dimitri.leonid.lindenwald
▴ 50
0
votes
3
replies
1.1k
views
Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList (re-posted, due to earlier post failure)
Agi4x44PreProcess
Agi4x44PreProcess
updated 15.0 years ago by
Pedro Lopez-Romero
▴ 120 • written 15.0 years ago by
Massimo Pinto
▴ 390
0
votes
0
replies
995
views
FW: normalization one color microarrays
Normalization
hgug4112a
PROcess
Agi4x44PreProcess
Normalization
hgug4112a
PROcess
12.7 years ago
Paz Tapia Ramirez
▴ 150
0
votes
0
replies
827
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO
GUI
hgug4112a
limma
PROcess
Agi4x44PreProcess
GO
GUI
hgug4112a
limma
PROcess
14.8 years ago
Massimo Pinto
▴ 390
0
votes
1
reply
965
views
Agi4x44PreProcess for miRNA data
miRNA
Agi4x44PreProcess
miRNA
Agi4x44PreProcess
updated 15.2 years ago by
Yong Li
▴ 190 • written 15.2 years ago by
MartenJäger
▴ 40
0
votes
2
replies
1.1k
views
Agi4x44PreProcess for miRNA data
miRNA
Agi4x44PreProcess
miRNA
Agi4x44PreProcess
updated 15.2 years ago by
MartenJäger
▴ 40 • written 15.2 years ago by
Pedro Lopez-Romero
▴ 120
0
votes
2
replies
894
views
Problem loading data for Agi4x44PreProcess
Cancer
Agi4x44PreProcess
Cancer
Agi4x44PreProcess
15.0 years ago
Bernal-Mizrachi, Leon
▴ 50
0
votes
0
replies
652
views
Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList.
Agi4x44PreProcess
Agi4x44PreProcess
15.0 years ago
Massimo Pinto
▴ 390
0
votes
3
replies
1.1k
views
read.targets() in the Agi4x44PreProcess package
Agi4x44PreProcess
Agi4x44PreProcess
updated 15.0 years ago by
Pedro Lopez-Romero
▴ 120 • written 15.0 years ago by
Massimo Pinto
▴ 390
0
votes
0
replies
698
views
problem with reading agilent microarray data into agi4x44preprocess
mgug4122a
Agi4x44PreProcess
mgug4122a
Agi4x44PreProcess
15.0 years ago
Jarek Bryk
▴ 110
0
votes
2
replies
967
views
limma and matrix design for single channel arrays - in search of a primer.
Microarray
limma
Agi4x44PreProcess
Microarray
limma
Agi4x44PreProcess
updated 15.0 years ago by
James W. MacDonald
65k • written 15.0 years ago by
Massimo Pinto
▴ 390
0
votes
0
replies
657
views
Agi4x44PreProcess probe summarization bug?
Agi4x44PreProcess
Agi4x44PreProcess
14.9 years ago
Tobias Straub
▴ 430
0
votes
3
replies
1.3k
views
agi4x44preprocess
Agi4x44PreProcess
Agi4x44PreProcess
updated 14.5 years ago by
Tobias Straub
▴ 430 • written 14.5 years ago by
Neel Aluru
▴ 460
0
votes
1
reply
1.0k
views
Agi4x44PreProcess - Replicated genes
Annotation
GUI
probe
Agi4x44PreProcess
Annotation
GUI
probe
Agi4x44PreProcess
updated 14.5 years ago by
Francois Pepin
★ 1.3k • written 14.5 years ago by
Neel Aluru
▴ 460
0
votes
3
replies
1.2k
views
Agilent Array Analysis Question
affy
limma
Agi4x44PreProcess
AgiMicroRna
affy
limma
Agi4x44PreProcess
AgiMicroRna
updated 14.5 years ago by
Francois Pepin
★ 1.3k • written 14.5 years ago by
Sunny Srivastava
▴ 350
0
votes
4
replies
1.3k
views
Agi4x44PreProcess
convert
GEOquery
Agi4x44PreProcess
convert
GEOquery
Agi4x44PreProcess
updated 14.4 years ago by
Neel Aluru
▴ 460 • written 14.4 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
844
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a
probe
limma
Agi4x44PreProcess
hgug4112a
probe
limma
Agi4x44PreProcess
14.4 years ago
Pedro Lopez-Romero
▴ 120
0
votes
0
replies
699
views
Agi4x44PreProcess - Filtering Probe Function
Annotation
Agi4x44PreProcess
Annotation
Agi4x44PreProcess
14.3 years ago
BJORN GILL
▴ 10
0
votes
0
replies
834
views
Agi4x44PreProcess - Filtering Probe Function
Annotation
Agi4x44PreProcess
Annotation
Agi4x44PreProcess
14.3 years ago
Yong Li
▴ 190
0
votes
3
replies
1.3k
views
within array normalization for one color agilent array.??
Normalization
Agi4x44PreProcess
Normalization
Agi4x44PreProcess
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
neeraj rana
▴ 100
0
votes
1
reply
1.2k
views
Agi4x44PreProcess Problem
Agi4x44PreProcess
Agi4x44PreProcess
updated 14.0 years ago by
Janszen, Derek B
▴ 10 • written 14.0 years ago by
Smirnov, Ivan
▴ 10
0
votes
1
reply
1.1k
views
Annotation in Agi4x44PreProcess
Annotation
zebrafish
probe
Agi4x44PreProcess
Annotation
zebrafish
probe
Agi4x44PreProcess
updated 13.8 years ago by
Marc Carlson
★ 7.2k • written 13.8 years ago by
Samantha England
▴ 40
0
votes
0
replies
651
views
filtering individual flagged values in Agi4x44PreProcess
Annotation
probe
Agi4x44PreProcess
Annotation
probe
Agi4x44PreProcess
13.8 years ago
Leslie M. Turner
▴ 10
0
votes
1
reply
770
views
Agi4x44PreProcess - Replicated Genes Error
Annotation
probe
Agi4x44PreProcess
Annotation
probe
Agi4x44PreProcess
updated 13.8 years ago by
Georg Otto
▴ 120 • written 13.8 years ago by
Samantha England
▴ 40
0
votes
1
reply
1.2k
views
Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a
Agi4x44PreProcess
hgug4112a
Agi4x44PreProcess
updated 13.8 years ago by
Neel Aluru
▴ 460 • written 13.8 years ago by
Turner, Julia
▴ 20
0
votes
0
replies
933
views
annotation for Mouse GE 8x60K
Annotation
Agi4x44PreProcess
Annotation
Agi4x44PreProcess
13.3 years ago
marco fabbri
▴ 320
0
votes
1
reply
1.3k
views
Agi4x44PreProcess /filtering probenames from GeneName
Annotation
probe
Agi4x44PreProcess
Annotation
probe
Agi4x44PreProcess
updated 13.1 years ago by
Wolfgang Huber
★ 13k • written 13.1 years ago by
Maria Raeder
▴ 10
0
votes
1
reply
2.0k
views
Error in` [. Data.frame `(obj, , columns [[a]]): undefined columns selected"
Agi4x44PreProcess
Agi4x44PreProcess
updated 12.8 years ago by
Paz Tapia Ramirez
▴ 40 • written 12.8 years ago by
Paz Tapia Ramirez
▴ 150
0
votes
4
replies
1.2k
views
Agi4x44PreProcess package: Error in build.est
Agi4x44PreProcess
Agi4x44PreProcess
updated 12.6 years ago by
Francois Pepin
▴ 80 • written 12.6 years ago by
Jon Mohl
▴ 20
0
votes
0
replies
825
views
best annotation package for drosophila (agilent gene expression)?
Annotation
Agi4x44PreProcess
Annotation
Agi4x44PreProcess
12.6 years ago
Jarek Bryk
▴ 110
0
votes
1
reply
996
views
Agi4x44Preprocess/Limma and number of significant p-values
Microarray
Annotation
limma
Agi4x44PreProcess
Microarray
Annotation
limma
Agi4x44PreProcess
updated 12.5 years ago by
Jarek Bryk
▴ 110 • written 12.5 years ago by
Paulo Nuin
▴ 200
0
votes
1
reply
920
views
Agi4x44Preprocess/Limma and number of significant p-values
Microarray
Annotation
limma
Agi4x44PreProcess
Microarray
Annotation
limma
Agi4x44PreProcess
updated 12.5 years ago by
Wei Xu
▴ 30 • written 12.5 years ago by
Paulo Nuin
▴ 200
0
votes
0
replies
848
views
Trouble using Agi4x44tPreProcess to anaylise old files
miRNA
limma
Agi4x44PreProcess
miRNA
limma
Agi4x44PreProcess
12.1 years ago
matthew vitalone
▴ 30
0
votes
0
replies
973
views
Problem with BGandNorm() from the Agi4x44PreProcess package
vsn
Agi4x44PreProcess
vsn
Agi4x44PreProcess
12.1 years ago
marco fabbri
▴ 320
0
votes
1
reply
2.4k
views
Annotation Database for Agilent 8x60K Human Gene Expression Arrays
Microarray
Annotation
Agi4x44PreProcess
Microarray
Annotation
Agi4x44PreProcess
updated 11.9 years ago by
Marc Carlson
★ 7.2k • written 11.9 years ago by
Karthik K N
▴ 200
0
votes
1
reply
1.7k
views
Error: Re: Annotation Database for Agilent 8x60K Human Gene Expression Arrays
Annotation
probe
affy
AnnotationDbi
Agi4x44PreProcess
Annotation
probe
affy
AnnotationDbi
updated 11.8 years ago by
Marc Carlson
★ 7.2k • written 11.8 years ago by
Karthik K N
▴ 200
0
votes
0
replies
817
views
comparing qpcr and chip
Agi4x44PreProcess
HTqPCR
Agi4x44PreProcess
HTqPCR
11.8 years ago
marco fabbri
▴ 320
0
votes
3
replies
1.3k
views
Agi4x44Preprocess - error on read.AgilentFE fucntion
limma
Agi4x44PreProcess
limma
Agi4x44PreProcess
updated 10.3 years ago by
James W. MacDonald
65k • written 10.3 years ago by
Guest User
★ 13k
0
votes
0
replies
883
views
Queries on the 4x44PreProcess Package
Normalization
ctc
limma
Agi4x44PreProcess
Normalization
ctc
limma
Agi4x44PreProcess
15.2 years ago
Pedro López Romero
▴ 360
0
votes
1
reply
956
views
How to do three-color agilent microarray analysis
microarray
limma
normalization
agi4x44preprocess
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
xuenjun1
• 0
40 results • Page
1 of 1
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Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0
by
James W. MacDonald
65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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