Showing : Alternative Splicing • reset
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Psichomics Suppa Input issue
psichomics SUPPA Splicing Alternative Splicing Retained Introns
3.5 years ago noahhelton98 ▴ 20
3
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3
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884
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 4.4 years ago by ▴ 200 • written 4.4 years ago by • 0
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2
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776
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using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 4.5 years ago by ▴ 200 • written 4.5 years ago by • 0
3
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2
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1.0k
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ASpli readCounts never ends!
aspli readCounts rna-seq alternative splicing AS
5.2 years ago fernandalpcosta ▴ 10
0
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893
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ASpli AsDiscover error
R alternative splicing ASpli AsDiscover
5.4 years ago • updated 5.3 years ago abdul rawoof ▴ 60
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940
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ASpli Package: Problem with readCounts() function, no Junctions analysed.
rnaseq alternative splicing ASpli
5.4 years ago nicolas.guyon2 • 0
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6
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1.5k
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Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq alternative splicing SGSeq
5.5 years ago andrea.bast • 0
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2
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1.2k
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Getting error in running maser 0.99.16
maser R rMATs alternative splicing
5.6 years ago Reza • 0
0
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3
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1.3k
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differential splicing events and covariates
limma rna-seq alternative splicing
updated 6.6 years ago by 50k • written 6.6 years ago by ▴ 80
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0
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1.2k
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visualizing top differentially spliced genes
limma voom alternative splicing
8.2 years ago osa.zuta ▴ 40
5
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16
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2.7k
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Read counts generated by SGSeq are always 0
sgseq splicing alternative splicing
updated 8.2 years ago by ▴ 200 • written 8.2 years ago by ▴ 20
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1
reply
1.1k
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estimateDispersions fails even with fitType local
deseq2 dexseq alternative splicing
updated 8.4 years ago by 41k • written 8.5 years ago by • 0
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5
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2.2k
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DEXSeq - Error in estimateSizeFactorsForMatrix(featureCounts(object)
DEXSeq DESeq2 dexseq deseq2 alternative splicing
8.6 years ago Fahmi Nazarie • 0
0
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1
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1.9k
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DEXSeq with multiple conditions
dexseq alternative splicing exon skipping
updated 9.1 years ago by ★ 3.7k • written 9.2 years ago by • 0
14 results • Page 1 of 1
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Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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