Bioconductor Alternative splicing

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682

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.5 years ago noahhelton98 ▴ 20

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874

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sgseq alternative splicing rna seq

updated 4.4 years ago by Leonard Goldstein ▴ 180 • written 4.4 years ago by 116100016 • 0

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773

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rna seq SGSeq Alternative splicing

updated 4.5 years ago by Leonard Goldstein ▴ 180 • written 4.5 years ago by 116100016 • 0

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1.0k

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aspli readCounts rna-seq alternative splicing AS

5.2 years ago fernandalpcosta ▴ 10

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888

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R alternative splicing ASpli AsDiscover

5.4 years ago • updated 5.3 years ago abdul rawoof ▴ 60

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936

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rnaseq alternative splicing ASpli

5.4 years ago nicolas.guyon2 • 0

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1.5k

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rna-seq alternative splicing SGSeq

5.5 years ago andrea.bast • 0

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1.2k

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maser R rMATs alternative splicing

5.6 years ago Reza • 0

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1.3k

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limma rna-seq alternative splicing

updated 6.5 years ago by Gordon Smyth 50k • written 6.5 years ago by lirongrossmann ▴ 80

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1.2k

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limma voom alternative splicing

8.2 years ago osa.zuta ▴ 40

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2.6k

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sgseq splicing alternative splicing

updated 8.2 years ago by Leonard Goldstein ▴ 180 • written 8.2 years ago by vakul.mohanty ▴ 10

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1.1k

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deseq2 dexseq alternative splicing

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by sahiilseth • 0

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2.2k

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

8.6 years ago Fahmi Nazarie • 0

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1.8k

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dexseq alternative splicing exon skipping

updated 9.1 years ago by Simon Anders ★ 3.7k • written 9.1 years ago by ebadr • 0

14 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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