Bioconductor BSGenome

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BSgenome

updated 11 weeks ago by James W. MacDonald 65k • written 3 months ago by Kate • 0

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605

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SNPlocs BSgenome

written 6 months ago by Stevie Pederson • 0

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556

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OrgDb BSgenome

6 months ago • updated 3 months ago mat149 ▴ 70

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BSgenomeForge BSgenome

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by kyliecode • 0

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874

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BSgenome

updated 4 months ago by eviatar.weizman • 0 • written 2.0 years ago by remerandmaxence ▴ 10

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719

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 11 months ago by ATpoint ★ 4.1k • written 11 months ago by Lillian • 0

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bsgenome GenomicFeatures package

updated 11 months ago by Hervé Pagès 16k • written 11 months ago by Manish • 0

7 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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