Bioconductor BSGenome

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BSgenome

updated 10 weeks ago by James W. MacDonald 65k • written 12 weeks ago by Kate • 0

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543

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OrgDb BSgenome

6 months ago • updated 3 months ago mat149 ▴ 70

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752

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bsgenome GenomicFeatures package

updated 11 months ago by Hervé Pagès 16k • written 11 months ago by Manish • 0

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976

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BSgenomeForge BSgenome

updated 10 months ago by James W. MacDonald 65k • written 11 months ago by kyliecode • 0

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706

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 10 months ago by ATpoint ★ 4.1k • written 10 months ago by Lillian • 0

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591

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SNPlocs BSgenome

written 6 months ago by Stevie Pederson • 0

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868

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BSgenome

updated 4 months ago by eviatar.weizman • 0 • written 2.0 years ago by remerandmaxence ▴ 10

7 results • Page 1 of 1

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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …

Comment: deseq2 results by ATpoint ★ 4.1k

> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…

Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k

It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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Popular Question to DevelopingHippo • 0

Scholar to Robert Castelo ★ 3.3k

Popular Question to Gyan Prakash Mishra ▴ 10