Showing : BSGenome • reset
0
votes
4
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1.3k
views
GRangesForUCSCGenome seems to be missing in rtracklayer 1.10, GenomicRanges 1.2
BSgenome BSgenome rtracklayer BSgenome BSgenome rtracklayer
updated 15.1 years ago by 6.7k • written 15.1 years ago by ★ 1.1k
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0
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1.1k
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error with MEDIPS.CpGenrich -> resize + segfault in MEDIPS.plotCalibrationPlot
BSgenome BSgenome MEDIPS BSgenome BSgenome MEDIPS
15.1 years ago Nora ▴ 20
0
votes
3
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1.4k
views
Biostrings bug?
BSgenome BSgenome BSgenome BSgenome
15.1 years ago arne.mueller@novartis.com ▴ 200
0
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1
reply
1.2k
views
Problem with genomicFeatures: id2name
BSgenome biomaRt BSgenome GenomicFeatures BSgenome biomaRt BSgenome GenomicFeatures
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ▴ 970
0
votes
1
reply
902
views
Biostrings pdf, missing? 'Efficient genome searching with Biostrings and the BSgenome data package'
Preprocessing BSgenome Biostrings BSgenome Preprocessing BSgenome Biostrings BSgenome
updated 15.1 years ago by ★ 8.2k • written 15.1 years ago by ★ 1.1k
0
votes
1
reply
1.1k
views
install error in GeneRfold
BSgenome BSgenome GeneRfold BSgenome BSgenome GeneRfold
updated 15.1 years ago by ★ 2.0k • written 15.1 years ago by ▴ 250
0
votes
2
replies
2.6k
views
Coverage vs GC bias - how to?
Coverage BSgenome BSgenome IRanges Coverage BSgenome BSgenome IRanges
updated 15.2 years ago by ▴ 590 • written 15.2 years ago by ▴ 100
0
votes
2
replies
1.3k
views
BioMart error
GO BSgenome biomaRt BSgenome GO BSgenome biomaRt BSgenome
updated 15.2 years ago by ▴ 400 • written 15.2 years ago by ▴ 80
0
votes
0
replies
858
views
ChIPpeakAnno:write2FASTA, getAllPeakSequence Functions
GO BSgenome BSgenome GO BSgenome BSgenome
15.3 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.6k
views
write.XStringView/write.XStringSet highly inefficient (solved)
Cancer BSgenome PROcess GLAD BSgenome Cancer BSgenome PROcess GLAD BSgenome
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 550
0
votes
2
replies
1.0k
views
rtracklayer issues with other packages?
GO BSgenome BSgenome rtracklayer GO BSgenome BSgenome rtracklayer
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 200
0
votes
0
replies
1.1k
views
Error message working with ChIPpeakAnno
Annotation GO BSgenome BSgenome Annotation GO BSgenome BSgenome
15.3 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.0k
views
Question on makeVennDiagram function in ChIPpeakAnno
GO BSgenome BSgenome GO BSgenome BSgenome
updated 15.4 years ago by ★ 4.3k • written 15.4 years ago by ▴ 410
0
votes
3
replies
1.6k
views
Curious error with 'subseq' function from BSgenome (IRanges)
Microarray Annotation BSgenome BSgenome Microarray Annotation BSgenome BSgenome
updated 15.5 years ago by 25k • written 15.5 years ago by ★ 1.9k
0
votes
2
replies
1.0k
views
Error: formal argument "envir" matched by multiple actual arguments
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 15.5 years ago by ▴ 30 • written 15.5 years ago by 25k
0
votes
1
reply
1.1k
views
Error: formal argument "envir" matched by multiple actual arguments
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 10
0
votes
3
replies
1.7k
views
Bug (?) in IRanges::findOverlaps(self, ignoreSelf=TRUE, ignoreRedundat=TRUE)
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
15.5 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
1.4k
views
Manipulating large DNAStringSet(s)
GO Cancer BSgenome BSgenome GO Cancer BSgenome BSgenome
updated 15.5 years ago by 16k • written 15.5 years ago by ★ 13k
0
votes
2
replies
1.8k
views
New SNPlocs data package for Human (dbSNP BUILD 131)
Cancer BSgenome SNPlocs BSgenome Cancer BSgenome SNPlocs BSgenome
15.6 years ago Hervé Pagès 16k
0
votes
7
replies
2.0k
views
[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function
Annotation GO BSgenome BSgenome ChIPpeakAnno Annotation GO BSgenome BSgenome ChIPpeakAnno
updated 15.7 years ago by ▴ 310 • written 15.7 years ago by ★ 4.3k
0
votes
0
replies
742
views
question about forgeBSgenomeDataPkg function
Cancer BSgenome BSgenome IRanges Cancer BSgenome BSgenome IRanges
15.7 years ago Hervé Pagès 16k
0
votes
2
replies
1.6k
views
getSeq error with multiple inqueries, BSgenome
BSgenome BSgenome BSgenome BSgenome
updated 15.7 years ago by 16k • written 15.7 years ago by ▴ 220
0
votes
1
reply
1.3k
views
concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]
Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans
updated 15.8 years ago by 21k • written 15.8 years ago by ★ 1.1k
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0
replies
1.1k
views
Extract masked sequences
BSgenome BSgenome BSgenome BSgenome
15.8 years ago Mercier Eloi ▴ 30
0
votes
0
replies
941
views
[Bioc-devel] BSgenome error
GO BSgenome BSgenome IRanges ChIPpeakAnno GO BSgenome BSgenome IRanges ChIPpeakAnno
15.9 years ago Tony Chiang ▴ 570
0
votes
0
replies
1.4k
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ChIPpeakAnno Biomart Archive annotation querying
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
16.0 years ago Khademul Islam ▴ 30
0
votes
1
reply
1.8k
views
ChIPpeakAnno Biomart annotation
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 30
0
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0
replies
990
views
ChIppeakAnno
GO BSgenome BSgenome GO BSgenome BSgenome
16.0 years ago Julie Zhu ★ 4.3k
0
votes
4
replies
1.5k
views
obtain DNA sequence
BSgenome BSgenome BSgenome BSgenome
updated 16.2 years ago by 16k • written 16.2 years ago by ▴ 20
0
votes
1
reply
1.8k
views
GetSeq function problems
BSgenome BSgenome BSgenome BSgenome
updated 16.3 years ago by 16k • written 16.3 years ago by ▴ 130
0
votes
0
replies
886
views
[Fwd: [Genome-announce] Note on human mitochondrial sequence in hg19]
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
16.3 years ago Hervé Pagès 16k
0
votes
0
replies
715
views
BSGenomeForge
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
16.3 years ago Hervé Pagès 16k
0
votes
1
reply
910
views
Error in assign while calling the vmatchPattern function
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 16.4 years ago by ★ 2.4k • written 16.4 years ago by 16k
0
votes
1
reply
1.4k
views
FW: biomaRt not working?
GO Cancer BSgenome biomaRt BSgenome GO Cancer BSgenome biomaRt BSgenome
16.5 years ago • updated 16.4 years ago john seers IFR ▴ 810
0
votes
1
reply
1.2k
views
biomaRt not working?
GO Cancer BSgenome biomaRt BSgenome GO Cancer BSgenome biomaRt BSgenome
16.5 years ago john seers IFR ▴ 810
0
votes
2
replies
1.2k
views
Error in masks for Dmelanogaster BSGenome
BSgenome BSgenome BSgenome BSgenome
updated 16.5 years ago by 16k • written 16.5 years ago by ▴ 100
0
votes
2
replies
2.7k
views
PWM matching using matchPWM in Biostrings
Transcription BSgenome Biostrings BSgenome Transcription BSgenome Biostrings BSgenome
updated 16.5 years ago by ★ 1.6k • written 16.5 years ago by ▴ 10
0
votes
1
reply
798
views
matchPdict error
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
16.7 years ago Hervé Pagès 16k
0
votes
3
replies
1.4k
views
other human genomes, other SNP sets?
Sequencing BSgenome SNPlocs BSgenome Sequencing BSgenome SNPlocs BSgenome
16.7 years ago Paul Shannon ★ 1.1k
0
votes
0
replies
804
views
matchPdict error
BSgenome BSgenome BSgenome BSgenome
16.7 years ago burak kutlu ▴ 200
0
votes
2
replies
1.2k
views
Error in assign while calling the vmatchPattern function
BSgenome BSgenome BSgenome BSgenome
updated 16.7 years ago by ▴ 330 • written 16.7 years ago by ▴ 200
0
votes
0
replies
2.0k
views
getSeq human genomic sequences
Annotation Cancer BSgenome PROcess GLAD BSgenome IRanges Annotation Cancer BSgenome GLAD
16.8 years ago Hervé Pagès 16k
0
votes
3
replies
1.9k
views
Genome position to miRNA or gene name
miRNA Alignment GO Cancer BSgenome BSgenome miRNA Alignment GO Cancer BSgenome BSgenome
updated 16.8 years ago by 25k • written 16.8 years ago by ★ 1.9k
0
votes
4
replies
1.6k
views
Course material for "Using Bioconductor for ChIP-seq experiments"
Sequencing Cancer BSgenome annotate Biostrings BSgenome Sequencing Cancer BSgenome
updated 17.0 years ago by ▴ 10 • written 17.0 years ago by ★ 1.6k
0
votes
1
reply
1.1k
views
New bosTau4 genome
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 17.0 years ago by ▴ 500 • written 17.1 years ago by 16k
0
votes
4
replies
2.8k
views
BSgenomes vs ENSEMBL
Transcription Annotation BSgenome annotate Biostrings BSgenome Transcription Annotation
updated 17.1 years ago by 16k • written 17.1 years ago by ★ 4.1k
0
votes
3
replies
1.0k
views
BSgenome: dm3 and panTro2
BSgenome BSgenome BSgenome BSgenome
updated 17.5 years ago by 16k • written 17.5 years ago by ▴ 330
0
votes
9
replies
2.9k
views
Restriction enzyme digestion
BSgenome BSgenome BSgenome BSgenome
updated 17.5 years ago by 16k • written 17.5 years ago by ▴ 90
0
votes
2
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982
views
BSgenome.Mmusculus.UCSC.mm8 and BSgenome
BSgenome BSgenome BSgenome BSgenome
updated 18.1 years ago by 16k • written 18.1 years ago by ▴ 20
349 results • Page 7 of 7
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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