Showing : BioMart • reset
0
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2.1k
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getBM and sqldf error - no such table
GO biomaRt GO biomaRt
updated 11.5 years ago by 68k • written 11.5 years ago by ★ 13k
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easyRNASeq: Number of total counts
GeneExpression RNASeq Genetics Coverage Normalization BSgenome Biobase Biostrings biomaRt
11.6 years ago Guest User ★ 13k
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BiomaRt getBM error: Unknown column
convert biomaRt convert biomaRt
11.6 years ago Guest User ★ 13k
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1
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1.3k
views
countOverlaps gives an empty SummarizeExperiments
RNASeq Alignment biomaRt rtracklayer DESeq RNASeq Alignment biomaRt rtracklayer DESeq
updated 11.6 years ago by 25k • written 11.6 years ago by ★ 13k
0
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1
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2.0k
views
Problem retrieving dN/dS from Biomart
biomaRt biomaRt
updated 11.7 years ago by 68k • written 11.7 years ago by ▴ 10
1
vote
1
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1.4k
views
matching Entrez-IDs to Affy probesets using biomaRt
biomaRt biomaRt
updated 11.7 years ago by ★ 7.2k • written 11.7 years ago by ★ 6.0k
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2
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1.1k
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biomaRt and rma
biomaRt biomaRt
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 6.0k
0
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4
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1.8k
views
Extracting strand information from GenomicFeatures transcript db objects
TranscriptDb biomaRt TranscriptDb biomaRt
updated 11.7 years ago by 16k • written 11.7 years ago by ▴ 100
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3
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1.6k
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Using Biomart other than Ensembl
Bos taurus biomaRt Bos taurus biomaRt
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
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1
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1.3k
views
bioMart request failed
biomaRt biomaRt
updated 11.7 years ago by ▴ 540 • written 11.7 years ago by ★ 13k
0
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0
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1.6k
views
OMIM - biomaRt?
biomaRt biomaRt
11.7 years ago Tim Smith ★ 1.1k
0
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6
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2.1k
views
Problem with filtering genes in biomaRt
biomaRt biomaRt
updated 11.8 years ago by ▴ 800 • written 11.8 years ago by ★ 13k
1
vote
4
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3.6k
views
howto map HuEx-1_0-st-v2 transcript_cluster_id's to gene symbols
biomaRt biomaRt
updated 11.8 years ago by 6.7k • written 11.8 years ago by ▴ 60
2
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2
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3.8k
views
biomaaRt error: Extra content at the end of the document
biomaRt biomaRt
updated 11.8 years ago by ▴ 540 • written 11.8 years ago by ▴ 240
0
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1
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1.9k
views
retrieving LD between two known SNPs with rsID
biomaRt biomaRt
updated 11.8 years ago by ★ 6.8k • written 11.8 years ago by ▴ 380
0
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9
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3.4k
views
Problems Counting Reads with summarizeOverlaps
biomaRt Rsamtools biomaRt Rsamtools
updated 11.9 years ago by ★ 6.8k • written 11.9 years ago by ▴ 300
0
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4
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views
RefSeq coordinates from biomaRt
biomaRt biomaRt
updated 12.0 years ago by 21k • written 12.0 years ago by ▴ 210
1
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1
reply
2.9k
views
how to get Entrez Gene ID from genomic coordinates
biomaRt biomaRt
updated 12.0 years ago by 68k • written 12.0 years ago by ▴ 20
0
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4
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1.9k
views
retrieving annotation
Annotation biomaRt GenomicFeatures Annotation biomaRt GenomicFeatures
updated 12.0 years ago by 16k • written 12.0 years ago by ▴ 110
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2
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2.3k
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biomaRt : cannot useMart with biomart.informatics.jax.org because host="lindon"
biomaRt Vega biomaRt Vega
updated 12.0 years ago by ▴ 540 • written 12.0 years ago by 43k
0
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3
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3.8k
views
Working with ensembl 73 & BSGenome
Annotation BSgenome TranscriptDb biomaRt BSgenome Annotation BSgenome TranscriptDb biomaRt
updated 12.0 years ago by 16k • written 12.0 years ago by ★ 13k
0
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1
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1.6k
views
ChIPpeakAnno, getAnnotation question
Annotation zebrafish convert biomaRt ChIPpeakAnno Annotation zebrafish convert biomaRt
updated 12.1 years ago by ★ 4.3k • written 12.1 years ago by ▴ 10
0
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0
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875
views
Batch retrieval of transcript and aminoacid lengths for a list of HGNC IDs
biomaRt biomaRt
12.1 years ago Gabriele Zoppoli ▴ 50
0
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1
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1.7k
views
ChIPpeakAnno, getAnnotation question
Annotation GO zebrafish convert biomaRt ChIPpeakAnno Annotation GO zebrafish convert
updated 12.1 years ago by ★ 4.3k • written 12.1 years ago by ★ 13k
3
votes
5
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5.8k
views
getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 12.2 years ago by ▴ 540 • written 12.2 years ago by ▴ 380
0
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0
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1.7k
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creating geneset files (.gmt) for GSEA
GO biomaRt GO biomaRt
12.2 years ago Nehme Hachem ▴ 20
0
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2
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3.0k
views
BiomaRt and archival versions of ensembl_mart
biomaRt biomaRt
updated 12.2 years ago by ▴ 540 • written 12.2 years ago by ▴ 50
1
vote
3
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2.3k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by ▴ 220
0
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0
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855
views
Course: Understanding R / Bioconductor, Sept 30-Oct 1, Seattle
Cancer Biostrings biomaRt IRanges GenomicRanges Cancer Biostrings biomaRt IRanges
12.2 years ago Martin Morgan 25k
1
vote
3
replies
3.1k
views
Problem with RIPSeeker
biomaRt RIPSeeker biomaRt RIPSeeker
updated 12.2 years ago by ▴ 510 • written 12.2 years ago by ▴ 30
0
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0
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1.4k
views
bioMart GO inconsistency, normal?
GO biomaRt GO biomaRt
12.3 years ago R Tagett ▴ 30
0
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0
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1.6k
views
RIPSeeker multicore option not working fully?
GO biomaRt RIPSeeker GO biomaRt RIPSeeker
12.3 years ago Davis, Wade ▴ 350
0
votes
0
replies
1.1k
views
Help with ensembl variation biomaRt query
SNP biomaRt SNP biomaRt
12.4 years ago William Noderer ▴ 10
1
vote
0
replies
1.7k
views
return value used for filter amongst attributes, getBM(), biomaRt
GO biomaRt GenomicRanges GO biomaRt GenomicRanges
12.4 years ago James Perkins ▴ 120
0
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2
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1.7k
views
unimart web Service not available
biomaRt biomaRt
updated 12.5 years ago by ▴ 90 • written 12.5 years ago by ★ 13k
0
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3
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11k
views
[biomaRt] Finding Orthologs genes between Human and Mouse - problem with getBM to retrieve some attributes
biomaRt biomaRt
updated 12.5 years ago by ▴ 540 • written 12.5 years ago by ▴ 20
0
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2
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2.5k
views
Annotation of Human Exon 1.0 ST
annotate biomaRt oligo annotate biomaRt oligo
updated 12.5 years ago by ★ 4.3k • written 12.5 years ago by ★ 13k
0
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1
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1.0k
views
R crash on getBM query
SNP Annotation biomaRt SNP Annotation biomaRt
updated 12.5 years ago by 21k • written 12.5 years ago by ▴ 10
0
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4
replies
1.7k
views
Queries about getting annotation post-Limma analysis
Normalization affy limma biomaRt oligo Normalization affy limma biomaRt oligo
updated 12.5 years ago by ▴ 750 • written 12.5 years ago by ▴ 180
0
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0
replies
1.2k
views
Error in example from biomaRt vignette
biomaRt BRAIN biomaRt BRAIN
12.5 years ago Steffen Durinck ▴ 90
0
votes
1
reply
1.8k
views
biomaRt not returning expected results
Annotation annotate biomaRt Annotation annotate biomaRt
updated 12.5 years ago by ▴ 540 • written 12.5 years ago by ★ 13k
0
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1
reply
3.6k
views
GViz trouble retreiving X chromosome data with BiomartGeneRegionTrack
biomaRt Gviz biomaRt Gviz
updated 12.6 years ago by ▴ 750 • written 12.6 years ago by ▴ 210
0
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0
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931
views
Replace the ensemble annotation with UCSC knownGene track in library "GenomeGraphs"
Annotation biomaRt Annotation biomaRt
12.6 years ago shirley zhang ★ 1.0k
0
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0
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1.1k
views
replace the ensemble annotation with UCSC knownGene track in library "GenomeGraphs"
Annotation biomaRt Annotation biomaRt
12.6 years ago shirley zhang ★ 1.0k
0
votes
2
replies
1.6k
views
ChIPpeakAnno query
Microarray Annotation Cancer Prostate annotate affy convert biomaRt ChIPpeakAnno Cancer
updated 12.6 years ago by ▴ 10 • written 12.6 years ago by ★ 4.3k
0
votes
7
replies
2.2k
views
error with retrieving dn and ds using biomart
biomaRt biomaRt
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 40
0
votes
0
replies
1.3k
views
Analysis inquiry for Affymetrix Human Exon ST1.0 array
Annotation Normalization biomaRt Annotation Normalization biomaRt
12.7 years ago Jeremy Ng ▴ 180
0
votes
1
reply
1.6k
views
Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file
Preprocessing BSgenome biomaRt BSgenome GenomicRanges MEDIPS Preprocessing BSgenome MEDIPS
updated 12.7 years ago by ▴ 570 • written 12.7 years ago by ▴ 290
0
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2
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2.3k
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biomaRt access for NCBIM37 build of mouse genome
biomaRt biomaRt
updated 12.7 years ago by ▴ 400 • written 12.7 years ago by ▴ 210
0
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0
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3.8k
views
build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno
12.7 years ago Julie Zhu ★ 4.3k
1,082 results • Page 12 of 22
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
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