Showing : BioMart • reset
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Cannot connect to unimart using biomaRt
biomaRt biomaRt
updated 12.7 years ago by ▴ 90 • written 12.7 years ago by ★ 13k
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1
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1.7k
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Retrieving dN, dS from biomaRt fails: Attributes from multiple pages not allowed
biomaRt biomaRt
updated 12.7 years ago by 68k • written 12.7 years ago by ★ 13k
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0
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1.1k
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easyRNASeq read counts varying when recounting same sample!
Annotation GO biomaRt easyRNASeq Annotation GO biomaRt easyRNASeq
12.7 years ago delhomme@embl.de ★ 1.2k
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easyRNASeq read counts varying when recounting same sample!
biomaRt easyRNASeq biomaRt easyRNASeq
12.7 years ago René ▴ 40
0
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2
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2.5k
views
Extracting strand information from GenomicFeatures transcript db objects
TranscriptDb biomaRt TranscriptDb biomaRt
updated 12.8 years ago by ★ 6.8k • written 12.8 years ago by ▴ 100
0
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0
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1.6k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt ideogram genomes zebrafish biomaRt ideogram genomes
12.8 years ago florian.hahne@novartis.com ★ 1.6k
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2
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1.5k
views
BiomaRt: getLDS keeps returning NULL
mouse4302 probe affy biomaRt mouse4302 probe affy biomaRt
updated 12.8 years ago by ▴ 540 • written 12.8 years ago by ▴ 110
2
votes
1
reply
4.7k
views
biomaRt query: retrieve exon locations etc
biomaRt biomaRt
updated 12.8 years ago by ▴ 540 • written 12.8 years ago by ★ 1.1k
0
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0
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1.1k
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biomaRt error
SNP biomaRt SNP biomaRt
12.8 years ago Christopher T Gregg ▴ 210
0
votes
2
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2.1k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt zebrafish biomaRt
updated 12.8 years ago by ★ 1.6k • written 12.8 years ago by ★ 13k
0
votes
2
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1.8k
views
geneid to gene name conversion
VariantAnnotation convert biomaRt VariantAnnotation VariantAnnotation convert biomaRt
updated 12.8 years ago by ▴ 750 • written 12.8 years ago by ▴ 10
0
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2
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3.2k
views
biomaRt does not load archived Ensembl Genes database anymore.
GO biomaRt Vega GO biomaRt Vega
updated 12.8 years ago by ▴ 540 • written 12.8 years ago by ▴ 20
0
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3
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1.7k
views
Problem with biomaRt update in R-2.15.1
biomaRt biomaRt
updated 12.8 years ago by 68k • written 12.8 years ago by ★ 13k
0
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2
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2.2k
views
getSequence from biomaRt changes the order of sequences given as input - is it normal?
Yeast biomaRt Yeast biomaRt
updated 12.9 years ago by ▴ 540 • written 12.8 years ago by ▴ 270
0
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2
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2.4k
views
biomaRt and RCurl
biomaRt biomaRt
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 10
0
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1
reply
1.2k
views
trouble with installing biomaRt in R-2.15
biomaRt biomaRt
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 190
0
votes
3
replies
2.4k
views
BiomaRt: getLDS keeps returning NULL
mouse4302 biomaRt mouse4302 biomaRt
updated 13.0 years ago by ▴ 10 • written 13.0 years ago by ★ 13k
0
votes
1
reply
887
views
how to find sequence and promoters
biomaRt biomaRt
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 50
0
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4
replies
4.0k
views
rs ids Retrieval using biomaRt
SNP biomaRt SNP biomaRt
updated 13.0 years ago by 6.7k • written 13.0 years ago by ▴ 760
0
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1
reply
1.0k
views
Old Annotation Packages?
biomaRt biomaRt
updated 13.1 years ago by 68k • written 13.1 years ago by ▴ 260
0
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0
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1.3k
views
biomaRt for COSMIC: frequency of mutation
biomaRt biomaRt
13.1 years ago Eleonora Lusito ▴ 40
0
votes
0
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1.2k
views
help with biomaRt bioconductor - Filter upstream_flank NOT FOUND problem
Network biomaRt Network biomaRt
13.1 years ago Stefan Kroeger ▴ 10
0
votes
2
replies
1.9k
views
creating GSEA files using biomart
affy biomaRt affy biomaRt
updated 13.2 years ago by ▴ 540 • written 13.2 years ago by ▴ 360
0
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2
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1.2k
views
Cannot construct AnnotationDb for GOStats
GO affy GOstats biomaRt GO affy GOstats biomaRt
13.2 years ago wrighth ▴ 260
0
votes
3
replies
4.8k
views
biomart database version problem
Annotation biomaRt Annotation biomaRt
updated 13.2 years ago by ▴ 540 • written 13.2 years ago by ▴ 40
0
votes
0
replies
1.2k
views
ChIPpeakAnno to find peaks nearest to miRNA
miRNA Annotation GO BSgenome biomaRt BSgenome ChIPpeakAnno miRNA Annotation GO BSgenome
13.3 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
2.4k
views
help with biomaRt bioconductor - Filter upstream_flank NOT FOUND problem
biomaRt biomaRt
updated 13.3 years ago by ★ 13k • written 13.3 years ago by ▴ 10
0
votes
1
reply
1.6k
views
biomaRt 'Please report this to the mailing list'
PROcess biomaRt PROcess biomaRt
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 170
0
votes
11
replies
3.1k
views
Problems in retrieving 3'UTR sequences of ALL human genes using biomaRt
biomaRt biomaRt
updated 13.3 years ago by ★ 1.1k • written 13.3 years ago by ▴ 200
0
votes
3
replies
1.3k
views
BiomaRt - Flanking regions
biomaRt biomaRt
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 760
0
votes
1
reply
1.2k
views
Help with GSEAlm
biomaRt GSEAlm biomaRt GSEAlm
updated 13.4 years ago by 68k • written 13.4 years ago by ▴ 20
0
votes
2
replies
1.1k
views
BiomaRt Details
biomaRt biomaRt
updated 13.4 years ago by ▴ 540 • written 13.4 years ago by ▴ 760
0
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0
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1.6k
views
[Engineers for ensemblgenomes.org #251937] BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info …
Drosophila melanogaster TranscriptDb biomaRt GenomicFeatures genomes Drosophila melanogaster
13.4 years ago Malcolm Cook ★ 1.6k
0
votes
2
replies
4.9k
views
biomaRt installation error ??
biomaRt biomaRt
updated 13.4 years ago by ▴ 280 • written 13.4 years ago by ▴ 440
0
votes
2
replies
963
views
understanding multiples matches between probesets and entrezgene (biomart)
biomaRt biomaRt
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ▴ 360
0
votes
7
replies
2.2k
views
makeTranscriptDbFromBiomart error
biomaRt biomaRt
13.4 years ago Stefanie ▴ 360
0
votes
1
reply
1.1k
views
BiomaRt Query error Edited
SNP biomaRt SNP biomaRt
updated 13.4 years ago by ★ 7.2k • written 13.4 years ago by ▴ 760
0
votes
0
replies
907
views
BiomaRt query error
SNP biomaRt SNP biomaRt
13.4 years ago Voke AO ▴ 760
0
votes
0
replies
1.5k
views
biomart error returning data
GO biomaRt GO biomaRt
13.5 years ago Guest User ★ 13k
0
votes
4
replies
1.7k
views
Genes to SNPs Tool
biomaRt biomaRt
updated 13.5 years ago by ▴ 80 • written 13.5 years ago by ▴ 760
0
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0
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1.5k
views
BiomaRt error: server down?
biomaRt biomaRt
13.5 years ago Lisa Hopcroft ▴ 40
0
votes
0
replies
1.0k
views
BiomaRt returns empty set for getBM for celegans miRNA
biomaRt biomaRt
13.5 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
3.3k
views
Problem using biomaRt to retrieve human SNPs given a list of gene symbols
biomaRt biomaRt
updated 13.5 years ago by ▴ 340 • written 13.5 years ago by ▴ 80
0
votes
1
reply
1.3k
views
RCurl problem
biomaRt biomaRt
updated 13.6 years ago by 68k • written 13.6 years ago by ▴ 620
0
votes
5
replies
3.6k
views
retrieve gene symbol/description
biomaRt biomaRt
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 420
0
votes
0
replies
1.7k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt genomes Cancer Organism biomaRt genomes
13.6 years ago Malcolm Cook ★ 1.6k
0
votes
2
replies
5.4k
views
problem with 'biomaRt' package installation: Error in loadNamespace(i, c(lib.loc, .libPaths()))
biomaRt biomaRt
updated 13.6 years ago by ★ 8.2k • written 13.6 years ago by ▴ 60
0
votes
2
replies
1.1k
views
Problems installing Genominator and GenomeGraphs
biomaRt biomaRt
updated 13.6 years ago by ★ 8.2k • written 13.6 years ago by ★ 13k
0
votes
2
replies
1.7k
views
listMart error with local biomart
biomaRt biomaRt
updated 13.6 years ago by ▴ 30 • written 13.6 years ago by ▴ 120
0
votes
1
reply
4.0k
views
problems generating a gene2GOlist in topGO
Genetics Annotation GO hgu95av2 convert biomaRt topGO Genetics Annotation GO hgu95av2
updated 13.6 years ago by ▴ 400 • written 13.6 years ago by ▴ 510
1,082 results • Page 13 of 22
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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