Showing : BioMart • reset
0
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Ensembl database query with biomart behaves strangely when using chromosomes as filter values
biomart ensembl
updated 10.4 years ago by ▴ 800 • written 10.4 years ago by ▴ 20
2
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1
reply
1.5k
views
Why does biomaRt query show inconsistent behavior with ensembl versions from March and May
biomart ensembl
10.4 years ago jmeisig ▴ 20
2
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3
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1.5k
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biomaRt gene count changed
biomart
10.4 years ago ebrudermanver ▴ 20
0
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1
reply
1.4k
views
Recent problem with biomaRt query
biomart biomaRt R rstudio
10.4 years ago nickp60 • 0
0
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3
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1.8k
views
Gviz: BiomartGeneRegionTrack error
Gviz Biomart gviz biomart
updated 10.4 years ago by ▴ 800 • written 10.4 years ago by ▴ 40
4
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5
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2.4k
views
How can I use biomaRt on previus databases?
biomart previus database retrive sequence
10.5 years ago kris.petrini • 0
9
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1
reply
2.7k
views
News: Ensembl release 80 is out!
biomart Ensembl zebrafish Rat 1000 genomes phase 3 News
updated 10.5 years ago by ▴ 390 • written 10.5 years ago by ▴ 800
3
votes
3
replies
3.6k
views
Different answer from Homo.sapiens and biomaRt packages!!
biomart homo.sapiens genome regions gene symbol
updated 10.5 years ago by 16k • written 10.5 years ago by ▴ 60
0
votes
1
reply
2.4k
views
biomaRt getBM() problem
biomaRt getBM
updated 10.6 years ago by ▴ 800 • written 10.6 years ago by • 0
1
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10
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3.8k
views
Attributes construct error in biomaRt
biomart
updated 10.6 years ago by ▴ 90 • written 10.6 years ago by • 0
0
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1
reply
1.6k
views
gviz: BiomartGeneRegionTrack throws an error
gviz biomart
updated 10.6 years ago by ★ 1.6k • written 10.6 years ago by ▴ 80
1
vote
3
replies
2.6k
views
Gviz and older ENSEMBL biomarts
gviz biomart
updated 10.6 years ago by ★ 1.6k • written 11.0 years ago by • 0
3
votes
10
replies
5.7k
views
Getting a list of all tRNA encoding genes for an organism?
trna ncrna genomicfeatures featuredb biomart
updated 10.6 years ago by 16k • written 10.6 years ago by ▴ 180
0
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0
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1.9k
views
News: Ensembl GRCh37 release 79 data update
biomart ensembl release news GRCh37 News
10.6 years ago Thomas Maurel ▴ 800
0
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2
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1.3k
views
Error in BiomaRt package
biomart
10.6 years ago Peter • 0
0
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2
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5.7k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
10.6 years ago mrprao • 0
2
votes
13
replies
3.2k
views
makeTranscriptDbFromBiomart failure from Data Anomaly
biomart genomicfeatures
updated 10.6 years ago by 16k • written 10.7 years ago by ▴ 80
0
votes
5
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2.2k
views
News: Ensembl 79 release is out!
Ensembl biomart release news News
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ▴ 20
0
votes
11
replies
4.6k
views
Missing data after BiomaRt query
biomart bioconductor
updated 10.7 years ago by 16k • written 10.7 years ago by • 0
0
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4
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1.9k
views
[biomaRt] getBM: Error when obtaining mim_morbid_description
biomart getbm error
10.7 years ago Tibor Fulop • 0
0
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4
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1.9k
views
GO Slim attribute disappeared in ENSEMBL_MART_PLANT
biomart
updated 10.7 years ago by ▴ 800 • written 10.8 years ago by ★ 1.7k
3
votes
2
replies
2.4k
views
non-BiomaRt die
biomaRt biomaRt
updated 10.7 years ago by ▴ 290 • written 11.8 years ago by ★ 13k
2
votes
1
reply
1.5k
views
Update database names in the biomaRT package
biomaRT database
updated 10.8 years ago by ★ 1.3k • written 10.8 years ago by ▴ 20
2
votes
1
reply
1.6k
views
accessing a local 0.8 mart instance with biomaRt
biomart rest
updated 10.8 years ago by ▴ 90 • written 10.8 years ago by ▴ 10
6
votes
1
reply
3.5k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 10.8 years ago by ▴ 370 • written 11.9 years ago by ▴ 160
0
votes
3
replies
1.6k
views
biomaRt connection error
biomart rwebservices
10.8 years ago Assa Yeroslaviz ★ 1.5k
0
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3
replies
1.6k
views
comisc in biomart
biomaRt
10.8 years ago Shi, Tao ▴ 720
0
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2
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2.7k
views
use BiomartGeneRegionTrack with the dataset grch37.ensembl.org
gviz ensembl biomart
10.9 years ago Tiphaine Martin ▴ 40
0
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2
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2.0k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt uniprot ensembl
updated 10.9 years ago by • 0 • written 10.9 years ago by ▴ 510
0
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0
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1.5k
views
News: Ensembl 78 release is out!
Ensembl Biomart News
10.9 years ago amonida ▴ 20
1
vote
2
replies
2.1k
views
biomaRt error message
biomaRt snp
updated 11.0 years ago by ▴ 800 • written 11.0 years ago by ▴ 10
0
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1
reply
1.8k
views
cannot connect to REACTOME database in R
biomart REACTOME
updated 11.0 years ago by ▴ 90 • written 11.0 years ago by • 0
2
votes
3
replies
12k
views
BiomaRt: protein coding transcript identification
ensembl protein coding biomart
updated 11.0 years ago by ▴ 800 • written 11.0 years ago by ▴ 120
0
votes
4
replies
3.9k
views
'external_gene_id' error when invoking the BiomartGeneRegionTrack function
Gviz biomart
updated 11.0 years ago by ★ 1.6k • written 11.0 years ago by ▴ 10
0
votes
0
replies
1.5k
views
output from getBM() function in biomaRt package
biomaRt
11.1 years ago k.askland ▴ 20
5
votes
2
replies
12k
views
Probe to gene id conversion
annotate biomart probe to gene id
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 20
13
votes
8
replies
18k
views
how to use biomaRt with ensembl build 37
biomaRt ensembl GRCh37
updated 11.1 years ago by ▴ 800 • written 11.1 years ago by ▴ 90
5
votes
5
replies
4.8k
views
SNP Function Information from biomaRt
biomart snp nonsynonymous
updated 11.1 years ago by 21k • written 11.1 years ago by ▴ 10
6
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19
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9.7k
views
biomaRt SNP (rs ID) -to-HGNC symbol mapping question
biomart
11.1 years ago k.askland ▴ 20
1
vote
2
replies
1.5k
views
NA values in Biomart query
Annotation biomaRt
updated 11.1 years ago by ▴ 800 • written 11.2 years ago by ▴ 70
0
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0
replies
1.7k
views
News: Useful information about Ensembl release 77 mart databases
ensembl biomart Vervet-AGM News
11.1 years ago Thomas Maurel ▴ 800
5
votes
5
replies
2.6k
views
Metagenomic analysis: Aligning ChIPseq data on TSS
metagenomics chipseq biomart shortread convert biomaRt
11.2 years ago • updated 11.1 years ago patrick.schordert ▴ 30
0
votes
1
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1.9k
views
Genes2GO and suggestions to make it faster
Annotation GO PROcess biomaRt Annotation GO PROcess biomaRt
updated 11.2 years ago by 21k • written 11.2 years ago by ▴ 20
0
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1
reply
1.7k
views
non-CpG methylated regions and strand information in MEDIPS output
BSgenome annotate biomaRt BSgenome MEDIPS BSgenome annotate biomaRt BSgenome MEDIPS
updated 11.3 years ago by ▴ 570 • written 11.3 years ago by ★ 13k
0
votes
2
replies
9.8k
views
biomaRt proxy issues
biomaRt biomaRt
updated 11.4 years ago by ▴ 30 • written 11.4 years ago by ▴ 680
0
votes
1
reply
3.5k
views
merge error: 'by.x' and 'by.y' specify different numbers of columns
ChIPSeq biomaRt chipseq ChIPSeq biomaRt chipseq
updated 11.4 years ago by 68k • written 11.4 years ago by ▴ 50
0
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0
replies
1.1k
views
biomaRt timeout solution?
biomaRt biomaRt
11.4 years ago Xiaokuan Wei ▴ 230
0
votes
0
replies
1.9k
views
biomaRt: getSequence returns "Sequence unavailable" where I'd expect NA
biomaRt biomaRt
11.4 years ago Jan T Kim ▴ 50
0
votes
3
replies
1.9k
views
biomaRt proxy issues
biomaRt biomaRt
updated 11.5 years ago by ▴ 30 • written 11.5 years ago by ★ 13k
0
votes
1
reply
1.4k
views
biomaRt mapping id RP5-1043L13.1
biomaRt Vega biomaRt Vega
updated 11.5 years ago by ▴ 800 • written 11.5 years ago by ▴ 930
1,082 results • Page 11 of 22
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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