Showing : BioStrings • reset
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Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO
12.0 years ago Hervé Pagès 16k
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BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS
12.0 years ago Hervé Pagès 16k
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How to save the result from calling matchPWM?
Biostrings Biostrings
updated 12.1 years ago by 16k • written 12.1 years ago by ▴ 200
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how to obtain base counts from BAM file at specific genomic coordinates
SNP Sequencing Coverage Alignment Cancer Biostrings PROcess IRanges GenomicRanges SNP
updated 12.2 years ago by ★ 11k • written 12.2 years ago by 16k
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RNAseq in silico simulator
RNASeq Biostrings RNASeq Biostrings
12.2 years ago Dave Gerrard ▴ 40
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A question when using Biostrings
Cancer Biostrings Cancer Biostrings
12.2 years ago Hervé Pagès 16k
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1.5k
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Fwd: BioStrings PairwiseAlignment deletion() insertion() function
Alignment Cancer Biostrings IRanges Alignment Cancer Biostrings IRanges
updated 12.2 years ago by ▴ 30 • written 12.2 years ago by 16k
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Course: Understanding R / Bioconductor, Sept 30-Oct 1, Seattle
Cancer Biostrings biomaRt IRanges GenomicRanges Cancer Biostrings biomaRt IRanges
12.3 years ago Martin Morgan 25k
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Trimming of partial adaptor sequences
Sequencing Cancer Biostrings Sequencing Cancer Biostrings
12.4 years ago Taylor, Sean D ▴ 250
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stringDist ?
Cancer Biostrings Cancer Biostrings
12.7 years ago Hervé Pagès 16k
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840
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Expected value of finding a sequence
Biostrings IRanges Biostrings IRanges
12.8 years ago Tim Smith ★ 1.1k
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Biostrings
GO Cancer Biostrings cycle GO Cancer Biostrings cycle
12.8 years ago Hervé Pagès 16k
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reading fasta file into R
Biostrings Biostrings
updated 13.4 years ago by 6.7k • written 13.4 years ago by ★ 13k
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Biostring: print sequence alignment to file
Alignment Cancer Biostrings Alignment Cancer Biostrings
updated 13.4 years ago by ▴ 100 • written 13.4 years ago by 16k
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Biostring: print sequence alignment to file
Sequencing Alignment Cancer Biostrings Sequencing Alignment Cancer Biostrings
updated 13.5 years ago by 16k • written 13.5 years ago by ▴ 100
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pairwiseAlignment of PDB files to canonical protein structure
Alignment Biostrings PROcess Alignment Biostrings PROcess
13.6 years ago Gregory Ryslik ▴ 10
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2.8k
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PWMscoreStartingAt and ambiguous subject seqs
Cancer Biostrings GLAD Cancer Biostrings GLAD
updated 13.6 years ago by 16k • written 13.6 years ago by ▴ 740
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2
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Calculating alignment scores from aligned sequences
Alignment Cancer Biostrings Alignment Cancer Biostrings
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ★ 13k
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11
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Biostring: print sequence alignment to file
Alignment Biostrings Alignment Biostrings
updated 13.7 years ago by ★ 1.7k • written 13.7 years ago by ▴ 100
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Non ambiguous DNA runs
Biostrings Biostrings
updated 13.7 years ago by ▴ 590 • written 13.7 years ago by ▴ 390
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oligonucleotideTransitions from Biostrings package
Cancer Biostrings Cancer Biostrings
13.7 years ago Hervé Pagès 16k
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oligonucleotideTransitions from Biostrings package
Biostrings Biostrings
13.7 years ago Muino, Jose ▴ 10
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making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer Apis mellifera BSgenome Biostrings Category BSgenome rtracklayer GO
13.8 years ago Matthew Young ▴ 50
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making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer Apis mellifera BSgenome Biostrings BSgenome rtracklayer goseq GO
13.8 years ago Alicia Oshlack ▴ 100
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making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer BSgenome Biostrings BSgenome rtracklayer GenomicFeatures goseq GO
13.8 years ago Hervé Pagès 16k
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2
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1.1k
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OS X 10.7.x "Lion"
Biostrings Biostrings
updated 13.8 years ago by ★ 1.2k • written 13.8 years ago by ▴ 70
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Biostrings - pairwiseAlignment trimmed pattern returned
Alignment Biostrings Alignment Biostrings
updated 13.9 years ago by ★ 6.8k • written 13.9 years ago by ▴ 210
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Fwd: the diffrent alignment result between pairwiseAlignment() in Biostrings package and EBI-webserver
Alignment Cancer Biostrings Alignment Cancer Biostrings
updated 14.0 years ago by ★ 6.8k • written 14.0 years ago by ▴ 50
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1
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the diffrent alignment result between pairwiseAlignment() in Biostrings package and EBI-webserver
Alignment Biostrings Alignment Biostrings
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 50
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biostrints translate() ambiguities?
Biostrings Biostrings
14.1 years ago Guest User ★ 13k
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RE : RE : rsamtools installation
Cancer Biostrings IRanges Rsamtools BiocInstaller Cancer Biostrings IRanges Rsamtools
updated 14.1 years ago by ▴ 140 • written 14.1 years ago by 25k
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[Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values
Cancer Biostrings GLAD Cancer Biostrings GLAD
updated 14.2 years ago by ★ 11k • written 14.2 years ago by 16k
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the same problem happened
Biostrings Biostrings
updated 14.2 years ago by 21k • written 14.2 years ago by ★ 2.0k
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3
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1.5k
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[Bioc-sig-seq] first remove low quality or adaptor
Cancer Biostrings convert Cancer Biostrings convert
updated 14.3 years ago by ★ 2.0k • written 14.3 years ago by 16k
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6
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SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression SNPlocs Biostrings Regression SNPlocs Biostrings
updated 14.3 years ago by 6.7k • written 14.3 years ago by ★ 4.2k
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Problem with Biostrings
Biostrings Biostrings
14.3 years ago Guido Leoni ▴ 200
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To find rsIDs
Biostrings Biostrings
updated 14.4 years ago by 6.7k • written 14.4 years ago by ▴ 400
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align microRNA with custom mRNA sequences
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA
14.4 years ago Hervé Pagès 16k
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2
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2.2k
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using and combining of "subseq"
Biostrings Biostrings
updated 14.5 years ago by ▴ 590 • written 14.5 years ago by ▴ 10
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alternative to matchprobes
matchprobes Biostrings matchprobes Biostrings
updated 14.6 years ago by 16k • written 14.6 years ago by ▴ 10
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[Course] CSAMA 2011: Computational Statistics for Genome Biology (Ninth Edition)
Sequencing Microarray Alignment Annotation Clustering Cancer Biostrings AnnotationDbi
14.7 years ago stefano iacus ▴ 430
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RE : Question about translate funciton in Biostrings package
Organism Biostrings Organism Biostrings
14.8 years ago li lilingdu ▴ 450
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2.3k
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Mapping genomic coordinates to transcript coordinates? (revived)
Biostrings GenomicFeatures Biostrings GenomicFeatures
updated 14.8 years ago by ★ 11k • written 14.8 years ago by 16k
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1
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1.8k
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Help about 'pairwiseAlignment' in Biostrings package
Alignment Biostrings Alignment Biostrings
updated 14.8 years ago by 16k • written 14.8 years ago by ▴ 450
0
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9
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2.5k
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Mapping microarray probes to the genome using findOverlaps
Microarray Alignment Annotation zebrafish probe Biostrings GenomicFeatures Microarray
updated 14.8 years ago by 21k • written 14.8 years ago by 16k
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2
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1.4k
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How Does one subset a XStringView or PDict object?
Transcription BSgenome Biostrings BSgenome Transcription BSgenome Biostrings BSgenome
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 410
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13
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3.5k
views
forge BSgenome data package
BSgenome Biostrings BSgenome BSgenome Biostrings BSgenome
updated 14.9 years ago by 16k • written 14.9 years ago by ▴ 330
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2
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1.2k
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rtracklayer issues with other packages?
GO Cancer BSgenome graph Biostrings GOstats BSgenome rtracklayer GO Cancer BSgenome
updated 15.1 years ago by ★ 11k • written 15.1 years ago by ▴ 200
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1
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920
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Biostrings pdf, missing? 'Efficient genome searching with Biostrings and the BSgenome data package'
Preprocessing BSgenome Biostrings BSgenome Preprocessing BSgenome Biostrings BSgenome
updated 15.2 years ago by ★ 8.2k • written 15.2 years ago by ★ 1.1k
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1.6k
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Difficulties updating Biostrings on Ubuntu
Biostrings Biostrings
updated 15.4 years ago by ★ 4.3k • written 15.4 years ago by ▴ 210
292 results • Page 5 of 6
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I have faced similar issues before, and often the problem comes down to package versions or R/Bioconductor compatibility. Make sure your R …
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That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
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The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
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If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
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Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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