Showing : BiomaRt • reset
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makeTranscriptDbFromBiomart for Arabidopsis thaliana (plants_mart_10)
Arabidopsis thaliana biomaRt Arabidopsis thaliana biomaRt
14.2 years ago annaick.carles ▴ 20
0
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4
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3.3k
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mis-matched gene symbols and entrez ID in biomaRt
biomaRt biomaRt
updated 14.2 years ago by ▴ 930 • written 14.2 years ago by ▴ 360
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2
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1.7k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 14.2 years ago by ▴ 40 • written 14.2 years ago by ★ 7.2k
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1.5k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
14.2 years ago Olivier Lucas ▴ 40
0
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1
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1.8k
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biomart query: ensembl gene id and entrez gene id confusion
biomaRt biomaRt
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 440
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0
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736
views
biomaRt and HapMap
biomaRt biomaRt
14.3 years ago Lasse Folkersen ▴ 20
0
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5
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2.2k
views
biomart error
biomaRt biomaRt
updated 14.3 years ago by 16k • written 14.3 years ago by ▴ 440
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0
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2.4k
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finding ensemble Ids in Biomart
biomaRt biomaRt
14.3 years ago chawla ▴ 190
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3
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1.6k
views
chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO
Annotation convert biomaRt bridge ChIPpeakAnno Annotation convert biomaRt bridge
updated 14.3 years ago by ▴ 810 • written 14.3 years ago by ★ 4.3k
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5
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1.8k
views
getBM returns error
biomaRt biomaRt
updated 14.3 years ago by ▴ 150 • written 14.3 years ago by ▴ 30
0
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0
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894
views
chippeakanno related
Annotation annotate convert biomaRt bridge Annotation annotate convert biomaRt bridge
14.3 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
984
views
chippeakanno related
Annotation convert biomaRt bridge Annotation convert biomaRt bridge
14.3 years ago Julie Zhu ★ 4.3k
0
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2
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2.3k
views
remove NA from named character vector
Bos taurus biomaRt Bos taurus biomaRt
14.3 years ago Iain Gallagher ▴ 930
0
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1
reply
1.9k
views
biomaRt and HapMap
SNP HapMap biomaRt SNP HapMap biomaRt
updated 14.3 years ago by ▴ 540 • written 14.3 years ago by ▴ 10
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2
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1.0k
views
Find all the genes n genes either side on the chromosome
GO biomaRt GO biomaRt
updated 14.3 years ago by ★ 13k • written 14.3 years ago by ▴ 300
2
votes
1
reply
2.8k
views
Entity 'nbsp' not defined using biomaRt
biomaRt biomaRt
updated 14.4 years ago by ▴ 400 • written 14.4 years ago by ▴ 20
0
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0
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1.2k
views
ChIPpeakAnno package - filter annotatedPeak for GO enrichment analysis
ChIPSeq Annotation GO biomaRt chipseq ChIPpeakAnno ChIPSeq Annotation GO biomaRt chipseq
14.4 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.6k
views
biomaRt package: problem with useDataset() function
biomaRt biomaRt
updated 14.4 years ago by ▴ 400 • written 14.4 years ago by ▴ 190
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0
replies
907
views
choice of biomaRt feature from annotatePeakInBatch
ChIPSeq Annotation biomaRt chipseq ChIPpeakAnno ChIPSeq Annotation biomaRt chipseq
14.4 years ago Julie Zhu ★ 4.3k
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3
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4.1k
views
biomaRt- too many attributes selected
biomaRt biomaRt
updated 14.5 years ago by ▴ 540 • written 14.5 years ago by ▴ 480
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1
reply
5.3k
views
how to map choromosome location to gene ID
biomaRt biomaRt
updated 14.5 years ago by ▴ 540 • written 14.5 years ago by ▴ 140
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2
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1.3k
views
Ensembl mouse proteins
biomaRt biomaRt
updated 14.5 years ago by 6.7k • written 14.5 years ago by ▴ 40
1
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0
replies
1.4k
views
biomart Ensembl Regulatory Build
SNP Transcription biomaRt SNP Transcription biomaRt
14.5 years ago Fabrice Tourre ▴ 970
0
votes
12
replies
3.0k
views
Biomart server down?
Genetics Cancer biomaRt Genetics Cancer biomaRt
updated 14.5 years ago by ▴ 660 • written 14.5 years ago by ▴ 20
0
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1
reply
954
views
Chromosome: HSCHR17_1
biomaRt biomaRt
updated 14.5 years ago by ▴ 540 • written 14.5 years ago by ▴ 970
0
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0
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1.7k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
14.5 years ago chawla ▴ 190
0
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2
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2.2k
views
Go terms attributes not available on Biomart ensembl
GO probe biomaRt GO probe biomaRt
updated 14.5 years ago by ★ 13k • written 14.5 years ago by ▴ 190
0
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4
replies
3.2k
views
Any changes in Biomart regarding GO terms? Script crashing today
GO biomaRt GO biomaRt
updated 14.5 years ago by ▴ 540 • written 14.5 years ago by ★ 1.9k
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0
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1.5k
views
empty go terms with bioMart
GO Yeast probe PROcess biomaRt GO Yeast probe PROcess biomaRt
14.5 years ago chawla ▴ 190
0
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0
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878
views
getSequence ensmebl biomaRt
biomaRt biomaRt
14.6 years ago Shi, Tao ▴ 720
0
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0
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1.5k
views
Using ChIPpeakAnno on a non-mainstream organism
Transcription Annotation GO AnnotationData Organism BSgenome biomaRt BSgenome ChIPpeakAnno
14.6 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
2.6k
views
biomaRt ensembl mmusculus does not contain all ensembl IDs (lincRNA, miRNA etc)?
miRNA biomaRt miRNA biomaRt
updated 14.6 years ago by ▴ 540 • written 14.6 years ago by ▴ 210
0
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1
reply
7.4k
views
using BioMart to query UniProt identifiers
GO biomaRt GO biomaRt
updated 14.6 years ago by ▴ 540 • written 14.6 years ago by ▴ 140
0
votes
0
replies
1.5k
views
GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
14.6 years ago David ▴ 860
0
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3
replies
1.8k
views
problem with biomaRt package using mart "snps", dataset "hsapiens_structvar", attribute "description"
biomaRt biomaRt
updated 14.6 years ago by ▴ 540 • written 14.6 years ago by ★ 13k
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8
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2.7k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 14.6 years ago by ▴ 930 • written 14.6 years ago by ▴ 860
0
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0
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907
views
problem with biomaRt package using mart "snps", dataset "hsapiens_structvar", attribute "description"
biomaRt biomaRt
14.6 years ago mmaguire ▴ 20
0
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1
reply
1.6k
views
protein orthologs
biomaRt biomaRt
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 40
0
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1
reply
2.1k
views
minor allele frequency of snps in hapmap database
biomaRt biomaRt
updated 14.7 years ago by ★ 4.3k • written 14.7 years ago by ▴ 240
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0
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1.3k
views
Discrepancies finding genes with a given GO term
GO Cancer Breast biomaRt GO Cancer Breast biomaRt
14.7 years ago Oscar Rueda ▴ 40
0
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1
reply
1.5k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 14.7 years ago by ★ 8.2k • written 14.7 years ago by ▴ 120
0
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8
replies
2.8k
views
IPI to entrez id
Proteomics GO biomaRt Proteomics GO biomaRt
14.7 years ago Dick Beyer ★ 1.4k
0
votes
3
replies
1.4k
views
GenomicFeatures: makeGeneDbFromBiomart()
Annotation biomaRt GenomicFeatures Annotation biomaRt GenomicFeatures
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ★ 4.1k
0
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0
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2.2k
views
GO with R and Bioconductor
Transcription Annotation GO GOstats biomaRt topGO GSEABase goseq Transcription Annotation
14.7 years ago Duke ▴ 210
0
votes
5
replies
2.9k
views
GO with R and Bioconductor
Transcription GO GOstats biomaRt topGO goseq Transcription GO GOstats biomaRt topGO
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 210
0
votes
2
replies
3.2k
views
problems with biomaRt
GO biomaRt GO biomaRt
updated 14.7 years ago by ▴ 540 • written 14.8 years ago by ▴ 40
0
votes
2
replies
1.9k
views
extending GenomicFeatures to makeTranscriptDbFrom other sources (i.e. GFF3)
TranscriptDb biomaRt TranscriptDb biomaRt
updated 14.7 years ago by ★ 7.2k • written 14.8 years ago by ★ 1.6k
0
votes
4
replies
2.4k
views
problem with biomaRt
biomaRt biomaRt
updated 14.7 years ago by 68k • written 14.8 years ago by ▴ 40
0
votes
6
replies
2.0k
views
problems connecting to Biomart today?
GO biomaRt GO biomaRt
updated 14.8 years ago by ▴ 400 • written 14.8 years ago by ★ 1.9k
0
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0
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1.1k
views
Useful information about Ensembl release 61 mart databases
Danio rerio biomaRt Vega Danio rerio biomaRt Vega
14.8 years ago Rhoda Kinsella ▴ 660
1,082 results • Page 15 of 22
Recent ...
Replies
Comment: Alternative to BrainArray custom CDF packages for Affymetrix chips? by Stephen Piccolo ▴ 600
Thank you!
Answer: Alternative to BrainArray custom CDF packages for Affymetrix chips? by Guido Hooiveld ★ 4.1k
It seems that through the Internet Archive these files can be obtained: https://web.archive.org/web/20240710102334/http://brainarray.mbni.…
Comment: Getting a large intercept with DESeq2 by Denise • 0
Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …
Comment: Error installing Seqinfo by shepherl 4.2k
Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week
Comment: APAlyzer by shepherl 4.2k
We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…
Votes
Comment: Error installing Seqinfo
Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Awards • All
Supporter to fabio.marroni • 0
Popular Question to Guido Hooiveld ★ 4.1k
Scholar to Gordon Smyth 53k
Popular Question to James W. MacDonald 68k
Popular Question to anjanaram1 ▴ 10
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