Showing : BiomaRt • reset
0
votes
1
reply
962
views
biomaRt: uniprot_mart
GO annotate biomaRt GO annotate biomaRt
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 10
0
votes
6
replies
1.6k
views
can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package
Annotation GO biomaRt Annotation GO biomaRt
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 290
0
votes
4
replies
1.6k
views
How to get a unique line of annotation for each specific genomic position by using biomaRt package
Annotation biomaRt Annotation biomaRt
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 290
0
votes
0
replies
1.2k
views
How can reach a specific annotation of phytozome by using biomaRt library
Annotation GO Arabidopsis lyrata biomaRt Annotation GO Arabidopsis lyrata biomaRt
14.8 years ago Sean Davis 21k
0
votes
1
reply
2.1k
views
How can reach a specific annotation of phytozome by using biomaRt library
Annotation Arabidopsis lyrata biomaRt Annotation Arabidopsis lyrata biomaRt
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 290
0
votes
2
replies
1.2k
views
biomaRt/martservice query error
biomaRt biomaRt
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 10
0
votes
0
replies
1.3k
views
Gene Name annotation with ChIPpeakAnno
Annotation AnnotationData annotate convert biomaRt Annotation AnnotationData annotate
14.8 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.2k
views
BiomaRt down?
biomaRt biomaRt
updated 14.8 years ago by ▴ 220 • written 14.8 years ago by ★ 1.3k
0
votes
2
replies
2.9k
views
Using biomaRt for getting Go Terms
GO biomaRt GO biomaRt
updated 2.6 years ago by • 0 • written 14.9 years ago by ▴ 190
0
votes
0
replies
1.9k
views
RE : maping SNPs; first foundation challenge offered
SNP Annotation Cancer SNPlocs TranscriptDb biomaRt GenomicFeatures SNP Annotation Cancer
14.9 years ago Vincent J. Carey, Jr. 6.7k
0
votes
5
replies
5.1k
views
BioMart connection problem
biomaRt biomaRt
14.9 years ago Paul Leo ▴ 970
0
votes
0
replies
1.2k
views
How do I use biomaRt to get upstreamFlank Genomic Sequence for many Genomes?
Alignment biomaRt genomes Alignment biomaRt genomes
14.9 years ago Noah Dowell ▴ 410
0
votes
1
reply
2.4k
views
biomaRt - attribute mirbase is missing
SNP miRNA GUI biomaRt Vega SNP miRNA GUI biomaRt Vega
updated 14.9 years ago by ▴ 660 • written 14.9 years ago by ▴ 460
0
votes
0
replies
1.5k
views
Bioinformatics Opening @ Barts Cancer Centre
Cancer biomaRt Cancer biomaRt
14.9 years ago Claude Chelala ▴ 40
0
votes
3
replies
1.7k
views
Problems accessing Ensembl archive 59 with EnsEMBL
biomaRt biomaRt
updated 15.0 years ago by ▴ 660 • written 15.0 years ago by ▴ 510
0
votes
1
reply
1.0k
views
Localizing repetitive regions on a chromosome
BSgenome biomaRt BSgenome rtracklayer BSgenome biomaRt BSgenome rtracklayer
updated 15.0 years ago by ★ 11k • written 15.0 years ago by ▴ 500
0
votes
2
replies
2.1k
views
Flanking TSS region for reverse strand using biomaRt
Yeast Organism biomaRt Yeast Organism biomaRt
updated 15.0 years ago by ▴ 10 • written 15.0 years ago by ▴ 340
0
votes
0
replies
1.8k
views
CORNA and biomaRt packages. miRNA and mRNA expression comparation
miRNA biomaRt miRNA biomaRt
15.0 years ago James W. MacDonald 68k
0
votes
3
replies
1.6k
views
CORNA and biomaRt packages. miRNA and mRNA expression comparation
miRNA biomaRt miRNA biomaRt
updated 15.0 years ago by ▴ 340 • written 15.0 years ago by ▴ 350
0
votes
1
reply
851
views
MySQL mode is not available in biomaRt?
biomaRt biomaRt
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 10
0
votes
8
replies
3.6k
views
biomaRt - batch query for chromosome location to gene identifier?
biomaRt ASSIGN biomaRt ASSIGN
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 120
0
votes
1
reply
1.3k
views
Error in makeGeneRegion from GenomeGraphs
biomaRt GenomeGraphs biomaRt GenomeGraphs
updated 15.0 years ago by ★ 6.6k • written 15.0 years ago by ★ 1.1k
0
votes
1
reply
1.3k
views
Error while ChIPpeakAnno installation
limma biomaRt IRanges ChIPpeakAnno limma biomaRt IRanges ChIPpeakAnno
updated 15.1 years ago by ★ 4.3k • written 15.1 years ago by ▴ 260
0
votes
2
replies
1.4k
views
omitted rows using getBM
probe biomaRt probe biomaRt
updated 15.1 years ago by ▴ 500 • written 15.1 years ago by ▴ 70
0
votes
3
replies
4.2k
views
Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Annotation hgu133plus2 biomaRt Annotation hgu133plus2 biomaRt
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ▴ 170
0
votes
1
reply
1.2k
views
Problem with genomicFeatures: id2name
BSgenome biomaRt BSgenome GenomicFeatures BSgenome biomaRt BSgenome GenomicFeatures
updated 15.1 years ago by ★ 7.2k • written 15.2 years ago by ▴ 970
0
votes
1
reply
1.2k
views
Agilent probenames and biomaRt
Annotation probe annotate biomaRt Annotation probe annotate biomaRt
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 60
0
votes
2
replies
1.3k
views
BioMart error
GO BSgenome biomaRt BSgenome GO BSgenome biomaRt BSgenome
updated 15.2 years ago by ▴ 400 • written 15.2 years ago by ▴ 80
0
votes
2
replies
2.6k
views
E. coli annotation to map?
biomaRt genomes biomaRt genomes
updated 15.2 years ago by ▴ 500 • written 15.2 years ago by ▴ 40
2
votes
3
replies
2.6k
views
How to get position for each gene ID/gene symbol instead of position for each transcript
Organism PROcess biomaRt GenomicFeatures Organism PROcess biomaRt GenomicFeatures
updated 15.2 years ago by ★ 13k • written 15.2 years ago by ★ 1.0k
0
votes
3
replies
1.6k
views
gene2pathway retrain: which model is more complete?
Genetics Coverage biomaRt gene2pathway Genetics Coverage biomaRt gene2pathway
15.2 years ago Bogdan ▴ 50
0
votes
1
reply
1.4k
views
biomaRt and hapmap "virtualSchema" parameter mis-specification
biomaRt biomaRt
updated 15.3 years ago by ▴ 500 • written 15.3 years ago by ▴ 10
0
votes
3
replies
1.3k
views
get position information for different gene/transcript IDs
biomaRt biomaRt
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ★ 1.0k
0
votes
0
replies
877
views
Ensembl marts updated to rel. 59 in BioMart Central Portal
biomaRt biomaRt
15.3 years ago jorge zamora ▴ 40
0
votes
0
replies
876
views
clarification on MULTI SPECIES COMPARISONS filters
biomaRt biomaRt
15.3 years ago jorge zamora ▴ 40
0
votes
0
replies
1.1k
views
biomaRt problem
biomaRt biomaRt
15.3 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
2.5k
views
Limit for chromosomal regions in biomaRt?
biomaRt biomaRt
updated 15.3 years ago by ▴ 500 • written 15.3 years ago by ▴ 170
0
votes
0
replies
984
views
biomaRt problem
biomaRt biomaRt
15.3 years ago anupam sinha ▴ 270
0
votes
0
replies
907
views
Concerning your response to "Error message working with ChIPpeakAnno"
convert biomaRt convert biomaRt
15.4 years ago Julie Zhu ★ 4.3k
0
votes
4
replies
2.3k
views
biomaRt
biomaRt biomaRt
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 270
0
votes
1
reply
1.3k
views
biomaRt bug - shuffling getBM headers and content
biomaRt biomaRt
updated 15.4 years ago by ▴ 500 • written 15.4 years ago by ▴ 80
0
votes
2
replies
1.6k
views
error/problem with biomaRt gene symbol query
Microarray Cancer probe biomaRt ASSIGN Microarray Cancer probe biomaRt ASSIGN
updated 15.4 years ago by ▴ 500 • written 15.4 years ago by ▴ 100
0
votes
1
reply
1.5k
views
biomaRt Error : Affy Human Exon array annotation
cdf annotate convert biomaRt cdf annotate convert biomaRt
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 260
0
votes
2
replies
1.4k
views
GO term enrichment
Microarray GO probe biomaRt Microarray GO probe biomaRt
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ★ 1.5k
0
votes
4
replies
1.7k
views
error in function reduce from girafe
Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe
updated 15.4 years ago by ▴ 450 • written 15.4 years ago by ▴ 810
0
votes
1
reply
1.3k
views
biomaRt: error using dataset from HapMap_rel27 mart
SNP biomaRt SNP biomaRt
updated 15.4 years ago by ▴ 500 • written 15.4 years ago by ▴ 10
0
votes
4
replies
4.7k
views
biomaRt connection problems
biomaRt biomaRt
updated 15.4 years ago by 21k • written 15.4 years ago by ★ 3.4k
0
votes
1
reply
1.7k
views
58 ensembl marts in biomart.org
biomaRt Vega biomaRt Vega
15.4 years ago jorge zamora ▴ 40
0
votes
4
replies
3.0k
views
biomaRt
probe affy biomaRt probe affy biomaRt
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 340
0
votes
1
reply
1.4k
views
is database RefSeq achievable from any Bioconductor package
Annotation Cancer biomaRt GenomicFeatures Annotation Cancer biomaRt GenomicFeatures
updated 15.5 years ago by ★ 6.5k • written 15.5 years ago by ★ 13k
1,082 results • Page 16 of 22
Recent ...
Replies
Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C by Kevin Blighe ★ 4.0k
Hello Lei, The concept of pseudobulk analysis applies equally to cell surface protein data as it does to gene expression data in single-…
Answer: Corrupted SQLite while trying to install PANTHER.db? by Kevin Blighe ★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error message indicates that the SQLite database within the PANTH…
Answer: Corrupted SQLite while trying to install PANTHER.db? by Kevin Blighe ★ 4.0k
My sincere apologies that my colleagues had ignored your question. Hello Alan. The error message "database disk image is malformed" i…
Answer: mzR-Rcpp compiler version issue by Kevin Blighe ★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error you encountered arises because the installed binary version…
Answer: org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key by Kevin Blighe ★ 4.0k
My sincere apologies that my colleagues had ignored your question. The duplication you observe in org.Ss.eg.db for UNIPROT accession P59…
Votes
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Awards • All
Supporter to fabio.marroni • 0
Popular Question to Guido Hooiveld ★ 4.1k
Scholar to Gordon Smyth 53k
Popular Question to James W. MacDonald 68k
Popular Question to anjanaram1 ▴ 10
Locations • All
The city by the bay, 21 minutes ago
The Cave, 181 Longwood Avenue, Boston, USA, 32 minutes ago
United States, 58 minutes ago
United States, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
Traffic: 764 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6