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Bugs
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0
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5
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2.3k
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DESeq2 contrast cleaning problem
software error
bugs
deseq2
written 10.0 years ago by
john.hu
• 0
0
votes
11
replies
2.4k
views
limma::contrast.fit() potential bugs when weights from voom() included
bugs
limma
3.4 years ago
Zhenyu
• 0
0
votes
2
replies
2.2k
views
AffyBatch and ArrayExpress
arrayexpress
affy
bugs
updated 7.9 years ago by
James W. MacDonald
68k • written 7.9 years ago by
Ed Siefker
▴ 230
5
votes
16
replies
3.6k
views
GSVA package scores are opposite on mac and windows
GSVA
bug
gsva
bugs
updated 8.4 years ago by
Robert Castelo
★ 3.4k • written 8.4 years ago by
JasonL_Weirather
▴ 10
0
votes
1
reply
1.5k
views
bug in dba.overlap (dba.plotVenn)
DiffBind
bugs
updated 8.7 years ago by
Rory Stark
★ 5.3k • written 8.7 years ago by
jeremydt
• 0
2
votes
3
replies
2.2k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene
seqlevels
bugs
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
wcstcyx
▴ 30
5
votes
2
replies
1.9k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
9.2 years ago
wcstcyx
▴ 30
0
votes
0
replies
1.4k
views
Bugs for impute package
bugs
impute
9.4 years ago
Shicheng Guo
• 0
0
votes
0
replies
1.9k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
10.2 years ago
wanghao1993333
• 0
0
votes
2
replies
2.1k
views
x-axis ticks are misaligned in ggbio tracks
ggbio
bugs
tracks
autoplot
11.0 years ago
cooketho
• 0
4
votes
3
replies
1.9k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics
bugs
error
updated 11.3 years ago by
James W. MacDonald
68k • written 11.3 years ago by
daugherty_a
• 0
0
votes
4
replies
2.5k
views
DESeq2 more differentially expressed genes
Bugs
deseq2
updated 11.4 years ago by
Michael Love
43k • written 11.4 years ago by
lmf.bill@gmail.com
▴ 10
0
votes
0
replies
1.8k
views
ggbio() + geom_alignment has stopped working
Bugs
ggbio
11.4 years ago
Anne Deslattes Mays
▴ 30
13 results • Page
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Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course
by
a2a2haa
• 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo
by
a2a2haa
• 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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