Bioconductor CDS

Showing : CDS • reset

votes

replies

2.0k

views

txdb granges cds orf R

updated 6.6 years ago by James W. MacDonald 67k • written 6.6 years ago by q.thomas • 0

votes

1.8k

views

genomeintervals UTRs exons CDS GenomicRanges

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by rubi ▴ 110

votes

2.2k

views

biomart bioconductor grangeslist cds ribosome profiling

updated 7.7 years ago by Hervé Pagès 16k • written 7.7 years ago by Walter F. Baumann ▴ 10

votes

replies

3.0k

views

genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene cds

8.4 years ago madsheilskov ▴ 10

votes

replies

2.1k

views

cds

9.2 years ago KB ▴ 50

votes

replies

2.6k

views

genomicfeatures genomicranges cds overlap

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by madsheilskov ▴ 10

votes

1.6k

views

genomicfeatures genomicranges cds overlap

updated 3.2 years ago by balajee • 0 • written 9.2 years ago by madsheilskov ▴ 10

7 results • Page 1 of 1

Recent ...

Replies

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k