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2.2k

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txdb granges cds orf R

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by q.thomas • 0

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1.9k

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genomeintervals UTRs exons CDS GenomicRanges

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by rubi ▴ 110

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2.3k

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biomart bioconductor grangeslist cds ribosome profiling

updated 7.8 years ago by Hervé Pagès 16k • written 7.9 years ago by Walter F. Baumann ▴ 10

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genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene cds

8.6 years ago madsheilskov ▴ 10

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2.2k

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cds

9.3 years ago KB ▴ 50

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genomicfeatures genomicranges cds overlap

updated 9.3 years ago by Michael Lawrence ★ 11k • written 9.3 years ago by madsheilskov ▴ 10

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1.6k

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genomicfeatures genomicranges cds overlap

updated 3.4 years ago by balajee • 0 • written 9.3 years ago by madsheilskov ▴ 10

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Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

Thanks, I figured it out.

Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0

I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…

Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

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Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

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