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estimator roughmethodofmoments DESeq2 R Code

updated 3.5 years ago by Basti ▴ 780 • written 3.5 years ago by stew • 0

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Coc code conduct Bioconductor News

5.2 years ago Laurent Gatto 1.6k

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r code rna wobble

7.9 years ago fawazfebin ▴ 60

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goseq DESEQ2 RSTUDIO CODE

updated 10.1 years ago by Steve Lianoglou ★ 13k • written 10.1 years ago by amyfm ▴ 10

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2.9k

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edgeR rpkm source code

updated 10.7 years ago by Martin Morgan 25k • written 10.7 years ago by thibault.lorin ▴ 10

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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to Lluís Revilla Sancho ▴ 760

Popular Question to James W. MacDonald 68k