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estimator roughmethodofmoments DESeq2 R Code

updated 2.5 years ago by Basti ▴ 780 • written 2.5 years ago by stew • 0

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1.2k

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Coc code conduct Bioconductor News

4.2 years ago Laurent Gatto 1.6k

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1.1k

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r code rna wobble

6.8 years ago fawazfebin ▴ 60

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goseq DESEQ2 RSTUDIO CODE

updated 9.1 years ago by Steve Lianoglou ★ 13k • written 9.1 years ago by amyfm ▴ 10

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2.6k

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edgeR rpkm source code

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by thibault.lorin ▴ 10

5 results • Page 1 of 1

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Comment: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k

I agree that the current behavior is not fully satisfactory and, indeed, it has prevented me from using the junction read counts from featu…

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Sorry, I didn't see the added response to your original answer. I think that would be a great idea; a novel junction to annot…

Comment: Cannot install GO.db and org.Hs.eg.db by Gabriel • 0

The downloaded source packages are in 'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages' Installation paths not writeable, …

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be. Give…

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k

I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…

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Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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