Showing : Cancer • reset
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Fwd: Creating One Single Object with Phenotype and Expression Data
GO Cancer GO Cancer
updated 14.2 years ago by ★ 13k • written 14.2 years ago by ▴ 30
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1
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1.9k
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[Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values
Cancer Biostrings GLAD Cancer Biostrings GLAD
updated 14.2 years ago by ★ 11k • written 14.2 years ago by 16k
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899
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Creating One Single Object with Phenotype and Expression Data
Cancer Cancer
14.2 years ago Ben Ganzfried ▴ 30
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1.7k
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illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
14.2 years ago Mark Cowley ▴ 910
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1.1k
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course announcement: Bioconductor basics, 24-25 oct 2011, Longwood Medical Area, Boston
Genetics Cancer Genetics Cancer
14.2 years ago Vincent J. Carey, Jr. 6.7k
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1
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1.3k
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Easy way to map Exon array probes to coordinates?
Cancer exonmap xps Cancer exonmap xps
updated 14.2 years ago by ★ 3.9k • written 14.2 years ago by ▴ 260
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0
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1.3k
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Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm
14.2 years ago Daniel Rico ▴ 110
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1.9k
views
Postdoctoral positions at EMBL
Sequencing Genetics GO Network Cancer genomes Sequencing Genetics GO Network Cancer
14.2 years ago Wolfgang Huber ★ 13k
0
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1
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1.6k
views
illuminaHumanv4 mappings
Cancer Homo sapiens Cancer Homo sapiens
updated 14.2 years ago by ★ 1.1k • written 14.2 years ago by ▴ 910
0
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3
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1.5k
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[Bioc-sig-seq] first remove low quality or adaptor
Cancer Biostrings convert Cancer Biostrings convert
updated 14.2 years ago by ★ 2.0k • written 14.2 years ago by 16k
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0
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952
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lumi combine with controlData
Cancer Cancer
14.2 years ago Mark Cowley ▴ 910
0
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6
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2.7k
views
[Bioc-devel] XML package downloading problem with bioconductor.org
Cancer BiocInstaller Cancer BiocInstaller
updated 14.2 years ago by ▴ 50 • written 14.2 years ago by 6.7k
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0
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1.2k
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XML package downloading problem with bioconductor.org
Cancer BiocInstaller Cancer BiocInstaller
14.2 years ago Liu,Bin ▴ 50
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0
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1.5k
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doubt in HTqPCR
Cancer ddCt cycle HTqPCR ASSIGN Cancer ddCt cycle HTqPCR ASSIGN
14.2 years ago Heidi Dvinge ★ 2.0k
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1
reply
1.0k
views
[Bioc-devel] DNS problem with bioconductor.org
Cancer PING Cancer PING
updated 14.2 years ago by ★ 8.2k • written 14.2 years ago by ▴ 160
0
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2
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1.4k
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DNS problem with bioconductor.org
Cancer PING Cancer PING
updated 14.2 years ago by ▴ 20 • written 14.2 years ago by ▴ 160
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0
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2.8k
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Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics Metabolomics Pathways Cancer Genetics Metabolomics Pathways Cancer
14.2 years ago Emilie Bard ▴ 10
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1
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1.2k
views
Course: Introduction to R / Bioconductor for Sequence Analysis, October 17-18
Cancer Cancer
14.2 years ago Martin Morgan 25k
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1.1k
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European Developers's Workshop 2011
Proteomics Cancer Proteomics Cancer
14.3 years ago Crispin Miller ★ 1.1k
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1.2k
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Bioconductor European Developers' Workshop, Manchester 2011
Proteomics Cancer Proteomics Cancer
14.3 years ago Crispin Miller ★ 1.1k
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0
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2.1k
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4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
14.3 years ago mattia pelizzola ▴ 200
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1.8k
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
14.3 years ago stefano iacus ▴ 430
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3.3k
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unique, duplicated, order, etc... on a GRanges object
Cancer GenomicRanges Cancer GenomicRanges
14.3 years ago Hervé Pagès 16k
0
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2
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2.1k
views
import.bw to Rle?
GO Cancer convert GO Cancer convert
updated 14.3 years ago by ★ 11k • written 14.3 years ago by ▴ 740
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0
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1.0k
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align microRNA with custom mRNA sequences
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA
14.3 years ago Hervé Pagès 16k
0
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1
reply
1.6k
views
creating a UniprotIdentifier within GSEABase
Annotation Cancer hgu95av2 convert GSEABase Annotation Cancer hgu95av2 convert GSEABase
updated 14.3 years ago by 25k • written 14.3 years ago by ▴ 910
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2
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1.3k
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Fwd: Probe matching using vmatchPDict
Cancer probe Cancer probe
updated 14.3 years ago by ▴ 50 • written 14.3 years ago by 16k
0
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0
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1.5k
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Some problems in combining ExpressionSet objects with the combine() function
Microarray GO Cancer Colon affy limma Microarray GO Cancer Colon affy limma
14.4 years ago James W. MacDonald 68k
0
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1
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2.0k
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Some problems in combining ExpressionSet objects with the combine() function
Microarray Cancer Colon limma Microarray Cancer Colon limma
updated 14.4 years ago by 68k • written 14.4 years ago by ▴ 70
0
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1
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1.1k
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[R] Fwd: Rgraphviz installation problem
GO Cancer Rgraphviz GO Cancer Rgraphviz
updated 14.4 years ago by ▴ 30 • written 14.4 years ago by 25k
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1.2k
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Fwd: [R] Rgraphviz installation problem
Cancer Rgraphviz Cancer Rgraphviz
14.4 years ago Ram H. Sharma ▴ 30
0
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2
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1.2k
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lumi/Biobase combine and gplots interaction
Cancer Cancer
updated 14.4 years ago by 25k • written 14.4 years ago by ▴ 740
0
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1
reply
1.7k
views
Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
updated 14.4 years ago by ▴ 590 • written 14.4 years ago by ★ 2.3k
0
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4
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1.7k
views
IRanges: Request for a "step" argument in runsum
Coverage Annotation Cancer PROcess IRanges genomes Coverage Annotation Cancer PROcess
updated 14.4 years ago by 16k • written 14.4 years ago by ▴ 100
0
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0
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1.4k
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Pathway specific gene lists in SPIA
Bayesian Cancer Bayesian Cancer
14.4 years ago Richard Friedman ★ 2.0k
0
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2
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1.9k
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RV: wgcna
Network Cancer Network Cancer
updated 14.4 years ago by ★ 3.4k • written 14.4 years ago by ▴ 50
0
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0
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930
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Microarrays intersection to expand your discovery
Microarray Cancer Microarray Cancer
14.4 years ago Tata Mumu ▴ 10
0
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1
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1.9k
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which illumina annotation package I should use for Illumina Mouse Ref 8 v 1.1 expression beadchip
Cancer Cancer
updated 14.4 years ago by ★ 1.1k • written 14.4 years ago by ▴ 580
0
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1
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986
views
IRanges: Request for a "step" argument in runsum
Cancer PROcess IRanges genomes Cancer PROcess IRanges genomes
updated 14.4 years ago by ★ 11k • written 14.4 years ago by 16k
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2
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1.3k
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IRanges package: findOverlaps on blobs
Cancer convert IRanges Cancer convert IRanges
14.5 years ago Hervé Pagès 16k
0
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2
replies
2.7k
views
Sliding window t-test?
Cancer Cancer
updated 14.5 years ago by ▴ 190 • written 14.5 years ago by ★ 1.1k
0
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0
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916
views
BSgenome package - danRer7 genome assembly
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
14.5 years ago Hervé Pagès 16k
0
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3
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1.4k
views
lumi and plotHousekeepingGene
Cancer lumi Cancer lumi
updated 14.5 years ago by ▴ 440 • written 14.5 years ago by ▴ 740
0
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0
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1.3k
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Chip version of Illumina HT 12 data [ lumi getChipInfo() method ]
Microarray Normalization Cancer Breast lumi Microarray Normalization Cancer Breast lumi
14.5 years ago Md.Mamunur Rashid ▴ 260
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5
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2.6k
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DESeq and paired samples - pairing vs pooling
Cancer DESeq Cancer DESeq
updated 14.5 years ago by 53k • written 14.6 years ago by ▴ 20
4
votes
0
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3.4k
views
Evidence-based guidelines for use the method="robust" option in lmFit
Microarray Normalization Bayesian Regression Cancer limma Microarray Normalization Cancer
updated 7 months ago by • 0 • written 14.5 years ago by ★ 2.0k
0
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0
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1.2k
views
lumi : Problems with the gammaFitEM() and lumiMethyStatus() functions.in lumi
Microarray Cancer lumi Microarray Cancer lumi
14.5 years ago NAIARA GARCÍA ▴ 10
0
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0
replies
946
views
Update to FlowMerge
Cancer flowMerge Cancer flowMerge
14.6 years ago Greg Finak ▴ 240
0
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1
reply
1.2k
views
Update to flowMerge
Cancer flowMerge Cancer flowMerge
updated 14.6 years ago by ▴ 150 • written 14.5 years ago by ▴ 240
0
votes
12
replies
3.0k
views
Biomart server down?
Genetics Cancer biomaRt Genetics Cancer biomaRt
updated 14.6 years ago by ▴ 660 • written 14.6 years ago by ▴ 20
1,555 results • Page 11 of 32
Recent ...
Replies
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Awards • All
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.2k
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