Showing : CancerData • reset
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Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 3.4 years ago by 67k • written 3.4 years ago by ▴ 50
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3
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1.7k
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Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 3.2 years ago by ★ 13k • written 3.2 years ago by ▴ 50
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Error with TCGA package - TCGAbiolinks
TCGAbiolinks RNASeq CancerData
updated 2.5 years ago by ▴ 270 • written 2.6 years ago by • 0
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Job: PDRA in Computational Biophysics and Cancer Research, University of Manchester, UK
CancerData StructuralGenomics VirusStability pH-dependence
3.5 years ago jim.warwicker • 0
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Job: Postdoc for computational biology on cancer omics data analysis at Liang lab of Wistar Institute, Philadelphia, US
omics cancerdata Pathways
12 months ago omicsresearch • 0
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Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing by delhirussianescortscom • 0
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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
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A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
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