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0
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2
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628
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Non-empty droplets versus good quality cells
CellRanger emptyDrops scRNAseq 10X
9 months ago rocanja ▴ 60
0
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0
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760
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Read Cellranger outputs in R, combine as SingleCellExperiment
ReadInR Cellranger GEX+Features+VDJ
2.9 years ago gregoire.destreel • 0
0
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1
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1.3k
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Aberrant number of cells
CellBarcode DropletUtils emptyDrops() Cellranger scRNAseq
updated 2.6 years ago by ▴ 20 • written 2.9 years ago by • 0
7
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12
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7.9k
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How to identify real cells in 10X RNA-seq ?
single-cell 10X Cell calling DropletUtils cellranger
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 20
4 results • Page 1 of 1
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limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
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Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
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Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
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For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
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Thanks for your reply!
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