Bioconductor ChAMPdata

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ChAMPdata ChAMP

updated 7 months ago by Josh • 0 • written 2.5 years ago by angel • 0

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516

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ChAMP ChAMPdata

11 months ago elgomez • 0

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3.9k

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EpicV2 ChAMPdata

updated 12 months ago by icecreamlover • 0 • written 12 months ago by nurkenber • 0

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1.5k

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ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP

updated 18 months ago by James W. MacDonald 68k • written 18 months ago by Mirella Aurora • 0

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698

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ChAMPdata ChAMP

20 months ago Meghana • 0

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1.9k

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loaddata ChAMPdata champload R ChAMP

updated 2.4 years ago by hfbarrerat • 0 • written 4.7 years ago by Bethan • 0

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1.3k

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ChAMP shiny ChAMPdata

updated 3.6 years ago by anna.stanislawska • 0 • written 3.6 years ago by Mari • 0

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1.5k

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ChAMPdata ChAMP

updated 3.9 years ago by Basti ▴ 780 • written 3.9 years ago by mariat • 0

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1.9k

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ChAMP limma Bioconductor ChAMPdata

updated 8 months ago by 81becky • 0 • written 4.2 years ago by Jinyue • 0

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1.8k

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ChAMP ChAMPdata

updated 4.5 years ago by shepherl 4.2k • written 4.5 years ago by Federica ▴ 10

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1.3k

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Illumina methylationArrayAnalysis ChAMPdata ChAMP

4.8 years ago • updated 4.7 years ago sissialva21 • 0

11 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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