Bioconductor ChAMPdata

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ChAMPdata ChAMP

updated 8 months ago by Josh • 0 • written 2.6 years ago by angel • 0

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ChAMP ChAMPdata

13 months ago elgomez • 0

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EpicV2 ChAMPdata

updated 13 months ago by icecreamlover • 0 • written 14 months ago by nurkenber • 0

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ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP

updated 19 months ago by James W. MacDonald 68k • written 19 months ago by Mirella Aurora • 0

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ChAMPdata ChAMP

21 months ago Meghana • 0

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loaddata ChAMPdata champload R ChAMP

updated 2.5 years ago by hfbarrerat • 0 • written 4.8 years ago by Bethan • 0

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ChAMP shiny ChAMPdata

updated 3.7 years ago by anna.stanislawska • 0 • written 3.7 years ago by Mari • 0

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ChAMPdata ChAMP

updated 4.0 years ago by Basti ▴ 780 • written 4.0 years ago by mariat • 0

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ChAMP limma Bioconductor ChAMPdata

updated 10 months ago by 81becky • 0 • written 4.3 years ago by Jinyue • 0

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ChAMP ChAMPdata

updated 4.6 years ago by shepherl 4.2k • written 4.6 years ago by Federica ▴ 10

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Illumina methylationArrayAnalysis ChAMPdata ChAMP

4.9 years ago sissialva21 • 0

11 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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