Bioconductor ChAMPdata

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ChAMPdata ChAMP

updated 10 months ago by Josh • 0 • written 2.8 years ago by angel • 0

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628

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ChAMP ChAMPdata

14 months ago elgomez • 0

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EpicV2 ChAMPdata

updated 14 months ago by icecreamlover • 0 • written 15 months ago by nurkenber • 0

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ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by Mirella Aurora • 0

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ChAMPdata ChAMP

23 months ago Meghana • 0

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loaddata ChAMPdata champload R ChAMP

updated 2.7 years ago by hfbarrerat • 0 • written 4.9 years ago by Bethan • 0

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ChAMP shiny ChAMPdata

updated 3.9 years ago by anna.stanislawska • 0 • written 3.9 years ago by Mari • 0

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ChAMPdata ChAMP

updated 4.1 years ago by Basti ▴ 780 • written 4.1 years ago by mariat • 0

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ChAMP limma Bioconductor ChAMPdata

updated 11 months ago by 81becky • 0 • written 4.4 years ago by Jinyue • 0

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ChAMP ChAMPdata

updated 4.7 years ago by shepherl 4.3k • written 4.7 years ago by Federica ▴ 10

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Illumina methylationArrayAnalysis ChAMPdata ChAMP

5.0 years ago sissialva21 • 0

11 results • Page 1 of 1

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0

Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…

Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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