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ChIPQCreport
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3
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ChIPQC - can't read in bam files
chipqc
chipqcreport
5.6 years ago
molly_the_minotaur
▴ 30
0
votes
1
reply
2.2k
views
Error computing metrics with ChIPQC (Bioconductor v3.5, ChIPQC v2.1.12)
chipqc
chipqcreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
Roger
• 0
0
votes
4
replies
1.6k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc
chipqcreport
6.7 years ago • updated 6.6 years ago
jared.andrews07
▴ 30
0
votes
4
replies
1.6k
views
ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC
ChIPQCreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
ZheFrench
▴ 50
4
votes
2
replies
1.3k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC
ChIPQCreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
ZheFrench
▴ 50
1
vote
3
replies
1.1k
views
ChIPQC installation does not force latest DiffBind version
chipqc
diffbind
chipqcreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
Coby Viner
▴ 50
0
votes
2
replies
973
views
ChipQCreport coverage plot failure?
ChipQC
chipqcreport
5.7 years ago
tapio.envall
• 0
0
votes
1
reply
525
views
Empty ChipQC Report
ChipQCReport
updated 15 months ago by
Okan
• 0 • written 17 months ago by
stacy.genovese
• 0
8 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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