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Showing :
Combat SVA
•
reset
3
votes
6
replies
2.3k
views
is it necessary to check batch effect in this case? and how to?
svaseq
combat sva
RANseq
batcheffect
removebatcheffect
updated 7.5 years ago by
Jakub
▴ 50 • written 7.5 years ago by
amoltej
▴ 10
1
vote
2
replies
1.5k
views
is it possible to before and after batch effect removal from the data and see that batch effect removal actually worked
combat sva
batch effect
comba
updated 7.5 years ago by
Vegard Nygaard
▴ 110 • written 7.5 years ago by
amoltej
▴ 10
0
votes
1
reply
3.4k
views
SVA behaving weirdly, system is computationally singular , problem with method leek only
SVA
combat sva
leek
updated 2.9 years ago by
chase.mateusiak
• 0 • written 7.0 years ago by
amoltej
▴ 10
1
vote
1
reply
1.6k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 7.7 years ago by
Jeff Leek
▴ 650 • written 7.7 years ago by
svlachavas
▴ 830
7
votes
3
replies
3.1k
views
SVA: Including variable of interest in ComBat model matrix
combat sva
SVA
sva
ComBat
batch effect
updated 8.0 years ago by
W. Evan Johnson
▴ 850 • written 8.0 years ago by
John Townsend
▴ 20
1
vote
2
replies
2.5k
views
cross platform normalization in R
R
Combat SVA
updated 8.3 years ago by
Steve Lianoglou
★ 13k • written 8.3 years ago by
nazaninhoseinkhan
• 0
0
votes
1
reply
1.2k
views
Combat prior plots good enough?
combat
combat sva
6.6 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
1
vote
2
replies
1.3k
views
Batch effect problem using SVA showing problems
SVA
combat sva
batch effect
updated 7.7 years ago by
Jeff Leek
▴ 650 • written 7.7 years ago by
amoltej
▴ 10
0
votes
0
replies
1.2k
views
removing batch effects using sva combat and linear regression
combat sva
microarry
Jeff leek
6.8 years ago
DataFanatic
▴ 10
0
votes
0
replies
631
views
Number of SVA increased after ComBat
combat sva
6.1 years ago
jonellevillar
• 0
0
votes
0
replies
822
views
Help with multiple batch effects
combat sva
batch effect
5.9 years ago
Fp
• 0
0
votes
0
replies
934
views
ComBat covariate bias when building centroid based predictors
combat
combat sva
pamr
limma design matrix
sva
5.7 years ago
jmsendoya
• 0
0
votes
0
replies
1.1k
views
SVA: Using ComBat for synthetic genetic array data
combat sva
sga
combat
batch effect
8.0 years ago
John Townsend
▴ 20
0
votes
4
replies
1.8k
views
ComBat: Adjustment for 3experimental variables
ENmix
combat.mc
illumina450k
combat sva
7.8 years ago
DSP
• 0
0
votes
0
replies
927
views
SVA) Error while using 'sva' package - combat
combat sva
7.7 years ago
kkwon
• 0
0
votes
2
replies
954
views
Problem with Combat batch adjustment
combat sva
7.4 years ago
vinnu260
▴ 10
0
votes
0
replies
1.2k
views
RPKM counts with SVA package & Combat with SVA?
batch effect
combat sva
sva
7.2 years ago
Ahdee
▴ 50
0
votes
0
replies
1.2k
views
What is the input for Combat in R?
combat sva
input files
7.2 years ago
arisarkar88
▴ 40
0
votes
0
replies
887
views
SVA: Reference manual improvment
combat sva
sva
7.0 years ago
alice.anlind
• 0
19 results • Page
1 of 1
Recent ...
Replies
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Votes
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
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