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CopywriteR
•
reset
0
votes
7
replies
2.0k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
smcnulty
• 0
2
votes
9
replies
2.5k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.3 years ago by
smcnulty
• 0
1
vote
2
replies
1.3k
views
Copywriter output looks strange
copywriter
8.2 years ago
MatthewGField
▴ 10
1
vote
2
replies
1.8k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
genomic8328
▴ 10
3
votes
12
replies
2.1k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 6.1 years ago by
Michael Lawrence
★ 11k • written 6.1 years ago by
TriS
▴ 200
0
votes
3
replies
1.4k
views
CopywriteR error: "Error in .Method"
CopywriteR
7.8 years ago
Tom
▴ 10
0
votes
1
reply
1.6k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 7.8 years ago by
t.kuilman
▴ 170 • written 7.8 years ago by
ahinsahr11
• 0
0
votes
1
reply
1.1k
views
Problems with CopywriteR
copywriter
updated 7.2 years ago by
t.kuilman
▴ 170 • written 7.2 years ago by
filipzembol
• 0
0
votes
1
reply
907
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 5.7 years ago by
t.kuilman
▴ 170 • written 5.7 years ago by
magdaaverte
• 0
2
votes
4
replies
908
views
CopywriteR job runs out of memory
copywriter
cnv
updated 4.0 years ago by
oscarkrijgsman
▴ 20 • written 4.0 years ago by
Ram
▴ 210
2
votes
1
reply
1.2k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 8.4 years ago by
t.kuilman
▴ 170 • written 8.4 years ago by
Felix
• 0
0
votes
1
reply
1.3k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
sshung
• 0
2
votes
4
replies
2.3k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
jcarter
• 0
3
votes
3
replies
3.8k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
jcarter
• 0
1
vote
3
replies
1.4k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 8.0 years ago by
t.kuilman
▴ 170 • written 8.0 years ago by
thestaroceanster
• 0
0
votes
1
reply
558
views
CopywriteR output
CopywriteR
updated 5 weeks ago by
fer_talavera
• 0 • written 2.5 years ago by
Joshua
• 0
0
votes
2
replies
310
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
6 weeks ago • updated 5 weeks ago
fer_talavera
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Guido Hooiveld
★ 4.0k
FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…
Votes
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
Answer: How to design DEXSeq formula for multiple variables
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