Bioconductor DEGreport

Showing : DEGreport • reset

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9.1k

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DEGreport DegPlot

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by kavator ▴ 30

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3.3k

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DESeq2 RNASeq DEGreport

updated 17 months ago by Michael Love 41k • written 3.1 years ago by Giulia ▴ 10

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2.9k

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DEGreport

updated 8 months ago by James W. MacDonald 65k • written 19 months ago by marinaw ▴ 20

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2.4k

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DEGreport

updated 4.0 years ago by Martin Morgan 25k • written 4.0 years ago by kavator ▴ 30

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1.6k

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DEGreport deseq2

updated 5.1 years ago by Lorena Pantano ▴ 120 • written 5.1 years ago by lqsdau ▴ 10

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1.6k

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BiocGenerics DESeq2 DEGreport RNASeqData DEG

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by Diya • 0

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923

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RNASeqData DEGreport edgeR

3.2 years ago Wuschel ▴ 10

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882

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DEGreport

updated 4.0 years ago by Lorena Pantano ▴ 120 • written 4.0 years ago by kavator ▴ 30

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848

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DEGseq clusterProfiler DEGreport

17 months ago Rob • 0

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576

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limma DEGreport Volcanoplot

updated 16 months ago by Gordon Smyth 50k • written 16 months ago by Mohammad • 0

10 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length