Bioconductor DESeq2

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DESeq2

updated 10 hours ago by Michael Love 41k • written 2 days ago by Zainab ▴ 10

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186

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DESeq2 design coldata

updated 1 day ago by swbarnes2 ★ 1.3k • written 3 days ago by arfranco ▴ 130

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149

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RNA-seq DESeq2

updated 12 hours ago by ATpoint ★ 4.1k • written 2 days ago by Reza • 0

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DESeq2

updated 3 days ago by Michael Love 41k • written 3 days ago by Espresso • 0

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123

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DESeq2

3 days ago • updated 2 days ago kcarey • 0

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126

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 3 days ago by ATpoint ★ 4.1k • written 3 days ago by james.zhang20 • 0

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130

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DESeq2

updated 4 days ago by ATpoint ★ 4.1k • written 4 days ago by angelathuynh5 • 0

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242

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DESeq2

updated 4 days ago by Michael Love 41k • written 5 days ago by HAK • 0

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102

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DiffBind ChIPSeqData DESeq2

updated 5 days ago by Michael Love 41k • written 5 days ago by marcusn • 0

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119

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DESeq2 ImpulseDE2 timecour timecoursedata moanin

5 days ago • updated 2 days ago Aurora • 0

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100

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DESeq2

updated 5 days ago by Michael Love 41k • written 6 days ago by Agung • 0

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DESeq2

updated 5 days ago by ATpoint ★ 4.1k • written 5 days ago by Dev • 0

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223

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DESeq2 contrasts

updated 6 days ago by ATpoint ★ 4.1k • written 6 days ago by bioinf ▴ 10

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478

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DESeq2 coefficient

10 weeks ago • updated 4 days ago JKim • 0

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2.5k

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deseq2

updated 5 days ago by Sey R. • 0 • written 4.6 years ago by hsbio ▴ 10

15 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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