Bioconductor DESeqDataSet

Showing : DESeqDataSet • reset

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8.2k

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DESeqDataSet DESeqDataSetFromMatrix rnaseq deseq2

7.8 years ago ErickF ▴ 40

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5.1k

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plot heatmap graphical rnaseqgene deseqdataset

9.0 years ago greg.mulhearn • 0

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4.7k

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covariate deseqdataset Deseq2 multiple factor design

updated 8.7 years ago by Michael Love 41k • written 8.7 years ago by Lillyhchen ▴ 10

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summarizedexperiment deseq2 deseqdataset multiple factor design differential gene expression

8.8 years ago Lillyhchen ▴ 10

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deseq2 bioconductor deseqdataset r summarizedexperiment

7.5 years ago sebastian.lobentanzer ▴ 50

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3.8k

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deseq2 deseqdataset transcripts

updated 7.1 years ago by Michael Love 41k • written 7.1 years ago by tarun2 • 0

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SummarizedExperiment DESeqDataSet GenomicRanges DESeq2 save

updated 9.2 years ago by Wolfgang Huber ★ 13k • written 9.2 years ago by akaever ▴ 30

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deseq2 deseqdataset rnaseqgene fastq reference genome

updated 9.0 years ago by James W. MacDonald 65k • written 9.0 years ago by greg.mulhearn • 0

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deseq2 infrastructure deseqdataset importing

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by eric.blanc • 0

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1.3k

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deseq2 deseqdatasetfrommatrix deseqdataset

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by jillian.waters • 0

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963

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deseq2 DESeqDataSet

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by colaneri ▴ 30

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887

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deseq2 DESeqDataSet

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by linouhao ▴ 20

12 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0